Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 2.9e-205 718.4 376 100.0
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 7.5e-153 544.3 340 82.9
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 3.0e-146 522.3 338 82.0
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 4.4e-145 518.5 330 82.4
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 3.2e-143 512.3 339 79.1
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 3.9e-141 505.4 336 78.6
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 6.6e-141 504.6 349 77.4
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 5.6e-140 501.5 343 77.6
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 9.5e-140 500.7 303 84.5
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.7e-136 490.0 341 76.8
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 2.2e-136 489.6 341 75.1
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 4.9e-136 488.4 337 76.6
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.1e-135 487.3 341 74.8
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.4e-135 486.9 335 78.2
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 1.9e-135 486.5 336 77.4
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 2.4e-135 486.1 339 75.8
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 5.4e-135 485.0 341 75.7
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 1.2e-134 483.8 346 76.3
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.6e-134 483.4 338 77.2
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.5e-134 482.3 318 81.1
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 7.8e-134 481.1 353 74.8
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 7.8e-134 481.1 356 75.6
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.0e-133 480.7 341 74.5
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 1.3e-133 480.3 296 83.1
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 1.3e-133 480.3 337 75.1
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 1.7e-133 479.9 341 74.5
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 2.3e-133 479.6 318 77.7
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 3.0e-133 479.2 341 74.5
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 5.0e-133 478.4 349 75.4
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 6.6e-133 478.0 341 76.2
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 6.6e-133 478.0 339 74.6
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 1.1e-132 477.2 320 79.7
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 4.3e-132 475.3 365 74.5
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 5.6e-132 474.9 352 72.2
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 5.6e-132 474.9 340 77.4
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 9.5e-132 474.2 339 74.0
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 9.5e-132 474.2 337 73.6
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.6e-131 473.4 333 75.1
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.6e-131 473.4 339 76.4
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.1e-131 473.0 365 74.0
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 2.1e-131 473.0 365 74.2
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 2.8e-131 472.6 342 73.4
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 3.6e-131 472.2 333 74.8
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 4.7e-131 471.9 353 72.5
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.8e-130 469.9 334 76.0
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.8e-130 469.9 347 73.8
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.8e-130 469.9 309 78.0
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.8e-130 469.9 318 76.4
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 2.3e-130 469.5 339 74.3
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 6.8e-130 468.0 308 77.3
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 8.9e-130 467.6 342 72.2
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 8.9e-130 467.6 357 70.3
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 1.2e-129 467.2 363 69.4
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.2e-129 467.2 302 79.1
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.5e-129 466.8 339 73.5
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 3.4e-129 465.7 311 78.1
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 3.4e-129 465.7 311 79.1
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 3.4e-129 465.7 324 76.5
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 4.4e-129 465.3 354 72.6
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.2e-128 463.0 338 72.5
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.9e-128 462.6 293 80.2
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 2.9e-128 462.6 350 71.1
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 6.4e-128 461.5 337 71.2
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 8.3e-128 461.1 334 74.9
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.1e-127 460.7 316 75.6
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 1.1e-127 460.7 351 72.6
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.4e-127 460.3 330 72.1
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.4e-127 460.3 330 72.1
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.9e-127 459.9 358 69.0
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 2.4e-127 459.5 350 71.1
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 9.2e-127 457.6 328 74.7
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 9.2e-127 457.6 348 72.7
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.2e-126 457.2 339 71.7
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 1.2e-126 457.2 318 76.4
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 2.1e-126 456.4 308 77.6
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 2.1e-126 456.4 393 66.7
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 2.1e-126 456.4 393 66.7
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 4.6e-126 455.3 361 69.8
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 6.0e-126 454.9 334 73.7
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 7.8e-126 454.5 347 69.7
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 2.3e-125 453.0 361 69.8
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 3.0e-125 452.6 309 78.3
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 3.9e-125 452.2 367 67.8
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 5.1e-125 451.8 270 84.4
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.5e-124 450.3 335 73.1
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 2.5e-124 449.5 321 75.1
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 3.3e-124 449.1 335 73.4
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.3e-124 449.1 335 73.4
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.3e-124 449.1 335 73.4
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.3e-124 449.1 324 74.4
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 5.6e-124 448.4 324 74.1
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 5.6e-124 448.4 339 70.8
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 9.5e-124 447.6 305 78.4
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 4.7e-123 445.3 290 81.0
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 8.1e-123 444.5 280 82.5
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 1.1e-122 444.1 293 79.5
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.4e-122 443.7 298 78.5
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.4e-122 443.7 260 86.9
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 4.0e-122 442.2 311 76.5
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 6.8e-122 441.4 309 75.1
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 8.9e-122 441.0 280 81.1
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 8.9e-122 441.0 280 81.1
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 1.2e-121 440.7 284 79.6
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.2e-121 440.7 284 79.6
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 1.2e-121 440.7 279 81.4
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 1.5e-121 440.3 279 81.4
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.5e-121 440.3 279 81.4
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 2.6e-121 439.5 284 79.6
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 3.4e-121 439.1 279 81.4
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 5.8e-121 438.3 345 71.0
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.7e-120 436.8 339 70.5
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 2.2e-120 436.4 338 70.7
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.2e-120 436.4 277 81.6
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 2.2e-120 436.4 277 81.6
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 2.2e-120 436.4 290 77.6
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 2.9e-120 436.0 339 69.6
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.1e-119 434.1 308 75.6
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 5.1e-117 425.2 361 67.9
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.5e-116 423.7 277 79.8
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 4.3e-116 422.2 244 88.5
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.2e-115 420.6 429 57.1
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.1e-115 419.9 376 62.8
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.4e-114 416.4 300 73.3
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.4e-111 407.1 331 68.3
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.4e-111 406.4 293 73.0
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.4e-111 406.4 341 65.1
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 6.0e-110 401.7 223 91.0
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 3.0e-109 399.4 369 61.5
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 5.6e-108 395.2 284 75.4
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 7.3e-108 394.8 254 79.9
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 5.3e-106 388.7 274 74.5
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.3e-106 388.7 299 69.9
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 9.0e-106 387.9 249 79.1
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.6e-105 386.3 262 75.6
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 6.4e-104 381.7 246 78.0
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 4.2e-95 352.4 257 73.5
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 4.2e-95 352.4 266 67.7
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 9.3e-95 351.3 286 66.1
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.0e-88 331.3 237 72.2
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 7.1e-87 325.1 255 65.5
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 6.3e-83 312.0 313 58.5
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 8.8e-69 265.0 231 63.6
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 2.8e-59 233.4 157 77.1
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 6.3e-59 232.3 161 74.5
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 7.2e-55 218.8 151 74.2
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 7.2e-55 218.8 151 74.2
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.9e-47 194.1 108 91.7
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.0e-36 157.5 102 80.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.4e-36 156.4 99 81.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.4e-34 150.6 115 69.6
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 6.6e-32 142.5 121 62.8
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 4.6e-25 119.8 102 66.7
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 4.0e-21 106.7 61 85.2
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 6.8e-21 105.9 64 85.9


User provided reference genes

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