Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 6.2e-285 983.4 481 100.0
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 4.6e-232 807.7 488 80.7
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 9.7e-230 800.0 483 80.5
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.3e-229 799.7 494 79.6
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 3.1e-228 795.0 484 80.0
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.0e-227 792.3 489 80.2
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 7.7e-227 790.4 486 80.5
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 8.5e-226 786.9 480 79.2
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.4e-225 786.2 492 78.7
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 4.2e-225 784.6 484 80.0
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 2.1e-224 782.3 484 79.8
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 4.7e-224 781.2 488 78.5
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 7.9e-224 780.4 492 77.4
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 4.8e-221 771.2 449 81.1
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 8.2e-221 770.4 492 77.4
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 3.1e-220 768.5 491 77.0
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 5.3e-220 767.7 484 76.7
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 9.1e-220 766.9 470 78.9
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.3e-218 763.1 444 81.1
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 5.0e-218 761.1 533 71.9
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 6.5e-218 760.8 491 76.0
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 8.5e-218 760.4 490 76.9
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 8.5e-218 760.4 479 76.8
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 8.5e-218 760.4 488 76.2
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.4e-217 759.6 425 84.0
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.4e-217 759.6 491 76.4
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 3.2e-217 758.4 484 76.2
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 3.2e-217 758.4 451 80.0
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 5.5e-217 757.7 491 76.0
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 7.2e-217 757.3 489 76.1
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 4.7e-216 754.6 492 75.2
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.4e-215 753.1 501 74.3
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 3.0e-215 751.9 492 75.0
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.1e-214 750.0 487 75.4
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 1.5e-214 749.6 495 73.9
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 2.0e-214 749.2 491 75.4
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 2.6e-214 748.8 446 80.7
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 7.4e-214 747.3 494 73.3
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 1.3e-213 746.5 492 73.4
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 2.2e-213 745.7 534 69.7
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 2.2e-213 745.7 494 73.9
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 2.8e-213 745.3 494 73.9
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 4.8e-213 744.6 426 81.2
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 1.4e-212 743.0 521 71.2
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.4e-212 743.0 486 74.7
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.4e-212 743.0 484 74.8
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 1.8e-212 742.7 481 74.6
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 2.4e-212 742.3 484 74.6
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 4.1e-212 741.5 487 74.1
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 4.1e-212 741.5 491 74.9
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 2.6e-211 738.8 484 74.6
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.7e-210 736.1 487 73.3
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 2.2e-210 735.7 483 73.9
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 3.8e-210 734.9 425 80.0
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 3.8e-210 734.9 481 73.4
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 6.5e-210 734.2 484 73.1
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 8.5e-210 733.8 449 77.5
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 1.9e-209 732.6 424 79.5
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 2.5e-209 732.3 481 73.4
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 7.2e-209 730.7 495 73.7
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 9.4e-209 730.3 482 74.5
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 3.6e-208 728.4 437 80.1
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 4.7e-208 728.0 481 73.2
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 6.1e-208 727.6 425 79.3
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 8.0e-208 727.2 484 72.7
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 1.0e-207 726.9 481 72.6
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 4.0e-207 724.9 461 75.3
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 5.2e-207 724.5 487 72.3
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 1.5e-206 723.0 487 74.9
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 2.6e-206 722.2 445 76.0
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 3.3e-206 721.8 492 73.4
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 4.4e-206 721.5 437 78.7
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 7.5e-206 720.7 425 80.0
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 2.8e-205 718.8 484 71.5
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 4.8e-205 718.0 490 73.3
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 4.8e-205 718.0 426 79.3
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 8.3e-205 717.2 483 71.4
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 8.3e-205 717.2 483 71.4
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.1e-204 716.8 487 70.6
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 9.1e-204 713.8 489 72.2
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 9.1e-204 713.8 483 71.0
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 9.1e-204 713.8 483 71.0
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.2e-203 713.4 425 79.3
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.6e-203 713.0 445 77.1
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 3.5e-203 711.8 484 70.9
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.2e-201 705.3 403 81.9
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 2.2e-197 692.6 455 73.2
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 2.8e-197 692.2 434 75.6
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.2e-195 686.8 490 69.0
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.5e-195 685.3 538 64.7
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 7.7e-195 684.1 405 80.2
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 7.7e-195 684.1 456 75.7
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.9e-194 682.2 378 85.7
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 4.1e-188 661.8 442 74.2
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 2.0e-187 659.4 423 74.5
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 9.5e-185 650.6 483 69.4
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.8e-184 649.0 378 79.9
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.8e-183 646.4 411 75.4
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.9e-177 626.3 394 76.6
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 6.2e-176 621.3 435 67.6
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.5e-174 616.7 472 65.0
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 1.5e-174 616.7 341 85.3
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 2.5e-169 599.4 448 63.8
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 2.1e-168 596.3 390 73.1
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.1e-167 592.4 378 74.9
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 3.1e-167 592.4 492 61.2
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.6e-163 580.1 468 60.0
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.1e-160 569.7 419 66.3
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 1.4e-156 557.0 377 72.9
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 7.3e-153 544.7 326 81.3
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.2e-150 537.3 432 61.1
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 6.9e-143 511.5 477 53.0
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 5.7e-129 465.3 256 84.8
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 1.6e-120 437.2 297 70.7
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 1.6e-120 437.2 297 70.7
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.4e-114 417.5 391 54.0
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 5.7e-113 412.1 348 60.1
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-110 404.4 299 66.9
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 2.0e-105 387.1 285 66.7
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 2.2e-104 383.6 270 70.0
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 4.1e-103 379.4 264 69.7
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 2.0e-102 377.1 294 65.0
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.0e-90 338.2 208 76.9
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 4.1e-87 326.2 390 43.8
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.4e-79 300.4 238 67.2
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 7.0e-79 298.9 333 45.9
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 1.7e-72 277.7 250 57.2
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 1.1e-68 265.0 580 31.9
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 4.0e-50 203.4 460 32.2
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 7.6e-49 199.1 110 85.5
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 4.9e-40 169.9 113 75.2
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.5e-38 163.7 112 68.8
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 2.2e-32 144.4 96 74.0
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 6.4e-32 142.9 98 66.3
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 2.1e-22 111.3 74 74.3
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 4.6e-22 110.2 60 80.0
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 1.3e-19 102.1 69 68.1
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 1.3e-19 102.1 69 68.1
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 3.1e-18 97.4 69 65.2
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 4.0e-18 97.1 69 65.2
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 5.3e-18 96.7 68 66.2
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 5.3e-18 96.7 92 53.3
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.5e-17 95.1 70 64.3
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 2.6e-17 94.4 69 65.2
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 2.6e-17 94.4 69 63.8
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 3.4e-17 94.0 68 64.7
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 3.4e-17 94.0 53 77.4
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 4.5e-17 93.6 69 63.8
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.1e-14 84.7 69 63.8
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 1.8e-13 81.6 61 67.2
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 5.7e-12 76.6 85 49.4
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 1.5e-09 68.6 45 75.6
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 1.7e-08 65.1 60 58.3
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.1e-07 62.4 50 60.0


User provided reference genes

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