Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.1e-237 826.2 425 100.0
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 5.2e-203 711.1 423 85.1
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 5.2e-203 711.1 425 84.2
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 2.1e-199 699.1 425 82.8
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.9e-198 694.9 425 82.6
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.1e-197 693.3 425 82.6
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 1.3e-190 669.8 425 79.8
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 5.1e-190 667.9 426 79.1
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 5.1e-190 667.9 425 79.3
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 6.6e-190 667.5 425 79.3
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.1e-189 666.8 425 78.8
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.6e-188 662.9 424 79.7
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.4e-187 659.8 421 79.8
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 1.4e-187 659.8 428 79.4
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.2e-187 657.9 425 78.1
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.5e-186 656.4 422 77.0
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.8e-186 654.4 425 77.6
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 5.8e-186 654.4 432 76.9
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 9.9e-186 653.7 425 77.4
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 9.9e-186 653.7 425 78.1
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.9e-186 653.7 425 77.6
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.3e-185 653.3 425 76.9
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 3.8e-185 651.7 425 76.9
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 1.1e-184 650.2 425 76.7
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.4e-184 649.8 425 76.5
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 5.4e-184 647.9 425 77.6
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.1e-183 646.0 425 75.5
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.1e-183 646.0 425 76.9
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 2.7e-183 645.6 425 76.5
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.0e-182 643.7 425 76.0
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.7e-182 642.9 426 77.7
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 2.3e-182 642.5 425 76.9
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 8.7e-182 640.6 423 77.3
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.1e-181 640.2 425 74.8
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.9e-181 639.4 425 75.5
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 4.3e-181 638.3 425 77.2
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 4.3e-181 638.3 425 76.5
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 9.6e-181 637.1 425 75.8
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.3e-180 636.7 425 75.1
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 3.6e-180 635.2 422 75.8
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 6.2e-180 634.4 429 75.8
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 6.2e-180 634.4 427 76.1
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 8.1e-180 634.0 425 75.1
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.8e-179 632.9 425 75.5
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 2.4e-179 632.5 425 76.5
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 3.1e-179 632.1 425 75.5
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 1.5e-178 629.8 425 73.6
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.3e-177 626.7 425 76.5
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 2.9e-177 625.5 427 74.9
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 1.1e-176 623.6 420 74.3
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 7.1e-176 620.9 426 73.7
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 7.1e-176 620.9 426 72.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 7.1e-176 620.9 424 73.8
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.6e-175 619.8 425 73.4
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.6e-175 619.8 425 73.2
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.5e-175 618.6 422 71.8
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.6e-175 618.2 422 73.7
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 6.0e-175 617.8 425 73.9
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.8e-174 616.3 425 74.6
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 3.9e-174 615.1 422 73.5
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 6.7e-174 614.4 422 75.1
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 1.1e-173 613.6 434 73.3
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.5e-173 613.2 422 73.2
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 4.3e-173 611.7 425 73.9
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 4.8e-172 608.2 424 72.2
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 1.8e-171 606.3 459 70.4
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 5.3e-171 604.7 426 72.1
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 3.4e-170 602.1 426 73.0
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 7.6e-170 600.9 458 71.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 7.6e-170 600.9 423 72.1
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.3e-169 600.1 425 71.3
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.7e-169 599.7 425 71.3
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.7e-169 599.7 427 71.2
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 6.4e-169 597.8 422 70.1
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 3.2e-168 595.5 402 73.9
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 5.5e-168 594.7 427 70.7
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 7.1e-168 594.3 425 72.5
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 6.0e-167 591.3 425 72.7
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 6.0e-167 591.3 427 71.0
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.0e-166 589.0 464 66.8
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 8.7e-166 587.4 420 72.6
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 9.6e-165 583.9 436 70.4
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 3.7e-164 582.0 426 70.0
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.2e-164 581.3 425 71.1
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 6.9e-163 577.8 427 68.9
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 6.5e-161 571.2 425 69.9
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 4.6e-159 565.1 426 67.1
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 8.7e-158 560.8 378 75.9
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 4.3e-157 558.5 426 68.1
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.2e-156 554.3 425 67.1
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.4e-155 553.5 426 67.6
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 5.3e-155 551.6 426 67.4
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 5.9e-154 548.1 427 66.5
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 7.6e-154 547.7 427 66.5
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 7.6e-154 547.7 426 66.4
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 7.6e-154 547.7 426 66.4
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.0e-153 547.4 423 66.9
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.0e-153 547.4 425 66.4
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 3.8e-153 545.4 425 64.9
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.4e-152 543.5 360 74.2
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 2.5e-152 542.7 422 63.3
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.2e-152 542.3 425 67.8
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.9e-150 535.4 444 64.2
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.3e-148 530.4 426 66.2
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 2.2e-148 529.6 425 65.9
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 6.3e-148 528.1 426 65.3
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 8.2e-148 527.7 324 80.9
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 8.2e-148 527.7 435 65.5
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-147 527.3 426 65.3
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 5.3e-147 525.0 426 65.0
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 2.0e-146 523.1 426 64.3
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 5.9e-146 521.5 425 64.0
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 5.9e-146 521.5 425 64.0
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.3e-145 520.4 426 63.6
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 1.3e-145 520.4 426 63.8
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.3e-145 520.4 425 63.1
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 6.5e-145 518.1 425 63.8
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 8.5e-145 517.7 313 82.1
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 3.6e-143 512.3 425 62.8
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 3.3e-141 505.8 383 68.7
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 9.7e-141 504.2 387 67.7
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.0e-138 496.5 427 59.7
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 3.8e-137 492.3 427 58.3
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 3.7e-132 475.7 451 56.5
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 7.0e-131 471.5 424 56.8
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 2.0e-130 469.9 400 64.8
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 2.3e-126 456.4 388 64.2
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.9e-121 439.5 288 76.7
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 3.2e-120 436.0 430 54.0
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.3e-110 403.3 428 56.5
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.2e-108 396.7 239 83.3
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 4.9e-108 395.6 241 81.7
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 2.3e-102 376.7 324 60.8
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 1.9e-99 367.1 355 57.2
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 3.0e-97 359.8 364 55.8
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.4e-69 266.5 214 65.0
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.7e-66 256.9 432 37.5
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.3e-65 254.6 325 48.0
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 9.0e-62 241.9 331 41.7
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.0e-57 228.4 197 65.5
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 3.9e-57 226.5 376 42.8
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 4.9e-52 209.5 194 60.3
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.9e-49 199.9 305 43.6
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 5.6e-48 196.1 145 65.5
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 7.4e-48 195.7 251 48.2
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 4.0e-46 189.9 194 55.2
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.7e-36 157.9 327 32.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 5.5e-35 152.9 150 56.0
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.4e-30 138.3 119 59.7
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 5.0e-28 129.8 105 66.7
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 2.7e-26 124.0 124 51.6
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.8e-25 121.3 78 75.6
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.8e-25 121.3 78 75.6
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 2.6e-21 107.5 76 69.7
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 5.3e-14 83.2 62 64.5
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.2e-13 82.0 48 83.3
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.9e-12 77.4 57 68.4
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 5.5e-11 73.2 53 75.5
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.6e-08 64.3 49 63.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.6e-08 64.3 49 63.3
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 2.6e-08 64.3 48 68.8
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.4e-08 63.9 133 36.8
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 7.5e-08 62.8 37 73.0
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 9.7e-08 62.4 257 26.1
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 2.2e-07 61.2 48 62.5
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 4.8e-07 60.1 204 26.5
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 8.3e-07 59.3 257 25.7
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 8.3e-07 59.3 204 26.5
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.1e-06 58.9 257 25.7
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 1.1e-06 58.9 204 26.5
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 1.1e-06 58.9 204 26.5
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.1e-06 58.9 36 80.6
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.4e-06 58.5 204 26.5
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 1.4e-06 58.5 204 26.5
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.8e-06 58.2 204 26.5
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.4e-06 57.8 257 25.7
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 2.4e-06 57.8 266 25.6
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 2.4e-06 57.8 266 25.6
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 3.1e-06 57.4 266 25.6
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 3.1e-06 57.4 266 25.6
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 3.1e-06 57.4 266 25.6
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 3.1e-06 57.4 75 44.0
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 3.1e-06 57.4 213 25.8
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 5.3e-06 56.6 257 25.7
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 5.3e-06 56.6 257 25.7
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 7.0e-06 56.2 204 26.0


User provided reference genes

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