Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.6e-228 795.8 427 100.0
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 4.4e-157 558.5 310 95.8
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.4e-131 473.0 310 80.6
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 9.1e-131 471.1 309 80.6
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 9.1e-131 471.1 310 79.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 1.0e-129 467.6 310 80.0
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.3e-129 467.2 312 78.5
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.3e-129 466.5 318 78.9
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 2.9e-129 466.1 310 78.1
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 5.0e-129 465.3 317 77.6
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 5.0e-129 465.3 317 77.6
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 6.6e-129 464.9 310 79.0
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 8.6e-129 464.5 318 78.6
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 8.6e-129 464.5 310 77.7
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.1e-128 464.2 310 78.4
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.1e-128 464.2 310 78.7
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.5e-128 463.0 310 79.4
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 5.5e-128 461.8 310 79.0
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 9.5e-128 461.1 310 79.4
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.1e-127 459.9 310 78.1
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 2.8e-127 459.5 310 77.7
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.6e-127 459.1 312 79.2
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.4e-126 457.2 311 77.2
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.4e-126 457.2 310 77.7
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.3e-126 456.4 311 77.2
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 2.3e-126 456.4 310 77.4
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 2.3e-126 456.4 310 77.4
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 3.0e-126 456.1 310 78.1
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 6.8e-126 454.9 310 77.1
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 6.8e-126 454.9 310 77.1
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.5e-125 453.8 310 77.7
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 2.0e-125 453.4 310 76.8
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 3.4e-125 452.6 310 76.8
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 3.4e-125 452.6 310 77.7
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 3.4e-125 452.6 310 77.1
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 9.8e-125 451.1 310 77.4
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.8e-125 451.1 318 76.1
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 2.2e-124 449.9 310 78.1
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.8e-124 449.5 310 77.1
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.7e-124 449.1 310 76.8
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 3.7e-124 449.1 310 77.4
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 2.4e-123 446.4 310 75.2
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 7.0e-123 444.9 318 76.4
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 4.5e-122 442.2 311 77.2
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 7.8e-122 441.4 310 73.9
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.0e-121 441.0 362 68.5
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.3e-121 440.7 310 74.8
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.3e-121 440.7 318 74.5
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.7e-121 440.3 319 74.6
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.7e-121 440.3 318 73.9
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.3e-121 439.9 318 73.0
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 2.3e-121 439.9 318 74.2
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 2.9e-121 439.5 319 73.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 3.8e-121 439.1 318 74.2
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 3.8e-121 439.1 318 72.3
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.1e-120 437.6 318 73.9
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.5e-120 437.2 310 74.2
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.9e-120 436.8 319 73.7
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 3.3e-120 436.0 324 72.2
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 4.3e-120 435.6 310 73.9
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.3e-120 435.6 318 73.6
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.6e-120 435.3 319 73.4
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 7.3e-120 434.9 310 73.9
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 9.5e-120 434.5 311 74.6
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.2e-119 434.1 310 74.2
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.2e-119 434.1 310 74.2
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.2e-119 434.1 310 72.9
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.6e-119 433.7 310 74.5
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.6e-119 433.7 319 73.0
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 2.1e-119 433.3 311 73.0
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 2.1e-119 433.3 318 71.4
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 8.0e-119 431.4 328 70.4
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.0e-118 431.0 309 73.1
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.8e-118 430.3 310 73.2
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 3.1e-118 429.5 311 73.3
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 8.9e-118 427.9 310 73.2
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.2e-117 427.6 310 71.3
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.0e-117 426.8 310 72.3
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.6e-117 426.4 310 70.6
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 2.6e-117 426.4 310 72.3
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 2.6e-117 426.4 307 73.3
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 7.5e-117 424.9 318 70.8
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 9.8e-117 424.5 312 71.8
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 4.9e-116 422.2 311 72.7
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 5.4e-115 418.7 310 72.3
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 5.4e-115 418.7 311 71.1
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.0e-114 416.8 345 65.8
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.7e-113 413.7 315 69.5
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.7e-113 413.7 315 69.5
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.3e-113 413.3 318 71.4
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 3.0e-113 412.9 318 71.4
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 3.9e-113 412.5 310 72.9
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 1.5e-112 410.6 316 69.6
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 3.1e-110 402.9 291 73.9
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 5.2e-110 402.1 278 77.3
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.2e-109 401.0 294 71.8
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.5e-109 400.6 295 72.2
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 2.0e-109 400.2 315 69.5
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.6e-109 399.8 319 71.5
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 9.8e-109 397.9 294 70.7
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.3e-108 397.5 294 70.7
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.7e-108 397.1 262 80.2
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.2e-106 391.0 313 66.8
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.3e-105 387.5 298 69.1
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.3e-105 386.7 281 73.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 5.1e-105 385.6 262 76.0
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.1e-104 384.4 331 63.1
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 4.3e-104 382.5 282 70.9
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.2e-103 380.9 282 70.6
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 2.1e-103 380.2 310 69.4
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 6.8e-102 375.2 310 68.7
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 4.6e-98 362.5 276 69.6
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.0e-98 362.1 256 74.6
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 8.6e-97 358.2 310 62.9
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 3.6e-95 352.8 320 62.5
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 6.2e-95 352.1 314 61.8
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 8.9e-94 348.2 262 67.2
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.3e-92 344.4 256 71.5
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.8e-87 326.6 310 59.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.9e-84 315.8 228 72.8
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 6.4e-84 315.5 310 57.7
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 2.7e-82 310.1 242 68.2
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.6e-82 309.3 221 71.0
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 3.5e-74 283.1 740 32.3
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.5e-72 276.9 314 51.6
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.7e-68 264.2 391 46.5
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.2e-66 258.1 308 49.7
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 6.0e-66 255.8 316 47.5
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 4.9e-60 236.1 178 75.3
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.9e-59 234.2 294 47.6
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 4.5e-53 213.0 182 68.1
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.5e-51 206.1 150 78.7
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 6.7e-49 199.1 251 52.6
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 3.1e-46 190.3 157 70.1
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.5e-45 188.0 143 74.1
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 3.4e-45 186.8 120 86.7
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 1.7e-44 184.5 121 85.1
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 4.4e-40 169.9 244 44.3
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 3.8e-36 156.8 250 46.0
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.5e-35 154.8 112 67.0
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 3.0e-33 147.1 309 34.3
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 5.9e-29 132.9 139 59.7
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.3e-28 131.7 91 74.7
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.6e-26 124.8 93 71.0
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.7e-26 123.2 110 62.7
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.7e-26 123.2 163 54.0
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.4e-24 117.1 86 76.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 4.8e-23 113.2 90 63.3
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.1e-22 110.5 89 61.8
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 8.8e-17 92.4 84 60.7
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.3e-15 86.3 58 74.1
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.1e-14 83.6 62 72.6
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 2.7e-13 80.9 394 25.4
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 3.2e-06 57.4 246 28.9


User provided reference genes

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