Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.6e-58 228.4 108 100.0
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.1e-52 208.8 108 89.8
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.2e-50 203.0 108 88.0
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 82.2
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 7.9e-47 190.3 108 81.5
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 2.3e-46 188.7 105 81.0
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 3.9e-46 188.0 105 81.0
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.1e-46 187.6 105 82.9
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 5.1e-46 187.6 106 79.2
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 1.1e-45 186.4 105 81.0
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.1e-45 186.4 103 82.5
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.5e-45 186.0 108 80.6
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.9e-45 185.7 103 82.5
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 1.9e-45 185.7 105 80.0
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 2.5e-45 185.3 108 79.6
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 2.5e-45 185.3 105 81.9
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 4.3e-45 184.5 105 80.0
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 5.6e-45 184.1 106 76.4
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 9.6e-45 183.3 105 80.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 77.1
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 77.1
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.3e-44 183.0 104 79.8
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 1.6e-44 182.6 105 79.0
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 3.7e-44 181.4 105 80.0
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 4.8e-44 181.0 108 76.9
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 4.8e-44 181.0 106 77.4
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 4.8e-44 181.0 104 77.9
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 6.2e-44 180.6 104 78.8
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 6.2e-44 180.6 104 79.8
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 8.2e-44 180.3 105 77.1
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 76.4
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 78.1
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.4e-43 179.5 104 77.9
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 1.4e-43 179.5 105 78.1
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.4e-43 179.5 105 77.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.4e-43 179.5 105 77.1
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 76.2
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 77.1
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.4e-43 178.7 104 78.8
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 76.2
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 3.1e-43 178.3 105 76.2
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.1e-43 178.3 105 76.2
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.1e-43 178.3 105 76.2
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.1e-43 178.3 105 77.1
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 3.1e-43 178.3 105 76.2
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 4.0e-43 177.9 103 78.6
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.3e-43 177.6 104 76.9
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.3e-43 177.6 104 76.9
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.3e-43 177.6 105 76.2
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 6.9e-43 177.2 108 76.9
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 6.9e-43 177.2 105 76.2
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 6.9e-43 177.2 107 73.8
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 9.0e-43 176.8 105 75.2
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 9.0e-43 176.8 103 77.7
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 9.0e-43 176.8 90 88.9
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.2e-42 176.4 105 76.2
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.5e-42 176.0 104 76.9
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 75.2
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 77.1
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 77.1
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 2.6e-42 175.3 104 76.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 76.2
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 76.2
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 2.6e-42 175.3 106 75.5
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 3.4e-42 174.9 105 75.2
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.5e-42 174.5 106 73.6
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 4.5e-42 174.5 105 75.2
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 5.8e-42 174.1 105 75.2
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 7.6e-42 173.7 104 75.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 7.6e-42 173.7 104 75.0
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.0e-41 173.3 105 74.3
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.0e-41 173.3 106 71.7
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 73.3
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.3e-41 172.9 99 75.8
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 75.2
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 75.0
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 75.0
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 75.0
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 2.2e-41 172.2 105 73.3
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 2.2e-41 172.2 107 72.0
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.9e-41 171.8 107 74.8
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 2.9e-41 171.8 105 74.3
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.8e-41 171.4 99 76.8
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 3.8e-41 171.4 106 71.7
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.8e-41 171.4 105 75.2
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.8e-41 171.4 103 73.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 4.9e-41 171.0 96 78.1
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 4.9e-41 171.0 104 73.1
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.4e-40 169.5 113 69.9
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.9e-40 169.1 103 72.8
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 70.5
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 2.5e-40 168.7 103 72.8
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 3.2e-40 168.3 103 72.8
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 3.2e-40 168.3 104 72.1
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 4.2e-40 167.9 105 72.4
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 4.2e-40 167.9 105 72.4
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.2e-40 167.9 105 72.4
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.2e-40 167.9 105 72.4
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 5.5e-40 167.5 104 73.1
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 5.5e-40 167.5 105 71.4
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.5e-40 167.5 106 74.5
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 7.1e-40 167.2 105 73.3
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 9.3e-40 166.8 105 71.4
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 9.3e-40 166.8 105 71.4
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 9.3e-40 166.8 105 71.4
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.2e-39 166.4 105 69.5
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.2e-39 166.4 95 78.9
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.1e-39 165.6 103 70.9
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 2.1e-39 165.6 103 71.8
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.1e-39 165.6 106 69.8
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 2.1e-39 165.6 106 69.8
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 2.7e-39 165.2 105 69.5
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.5e-39 164.9 106 69.8
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 4.6e-39 164.5 105 70.5
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 4.6e-39 164.5 105 69.5
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 6.0e-39 164.1 103 70.9
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 7.9e-39 163.7 103 69.9
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.3e-38 162.9 105 68.6
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 1.8e-38 162.5 101 73.3
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 1.8e-38 162.5 101 73.3
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.8e-38 162.5 106 68.9
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 1.8e-38 162.5 103 68.9
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.3e-38 162.2 105 68.6
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 3.0e-38 161.8 105 68.6
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.9e-38 161.4 105 67.6
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 5.1e-38 161.0 105 66.7
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 5.1e-38 161.0 106 67.0
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 5.7e-37 157.5 105 65.7
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 9.7e-37 156.8 88 76.1
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 6.3e-36 154.1 109 64.2
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 6.9e-35 150.6 167 48.5
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.4e-30 136.3 82 76.8
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 1.8e-30 136.0 82 76.8
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.3e-30 135.6 106 60.4
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.1e-29 133.3 103 61.2
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.5e-29 132.1 100 61.0
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 2.5e-29 132.1 75 72.0
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 4.3e-29 131.3 95 60.0
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 9.7e-29 130.2 99 59.6
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.8e-27 125.9 69 75.4
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.6e-26 122.1 80 67.5
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 1.0e-25 120.2 100 56.0
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 1.6e-23 112.8 97 47.4
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 7.9e-23 110.5 67 76.1
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.0e-21 105.9 73 67.1
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 3.3e-21 105.1 63 77.8
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 4.4e-21 104.8 68 72.1
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 9.7e-21 103.6 71 66.2
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 2.4e-19 99.0 63 74.6
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 4.1e-19 98.2 77 63.6
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 5.3e-19 97.8 92 44.6
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.2e-18 96.7 57 77.2
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 2.0e-18 95.9 59 78.0
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 1.1e-16 90.1 63 66.7
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 1.1e-16 90.1 45 84.4
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 4.2e-16 88.2 90 40.0
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.2e-15 86.7 55 70.9
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 2.7e-15 85.5 106 45.3
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 6.1e-15 84.3 48 81.2
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.9e-14 81.6 53 60.4
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 7.4e-13 77.4 65 58.5
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 9.1e-11 70.5 45 66.7
ClCG06G005540 Citrullus lanatus HOM05D004069 ORTHO05D004699 8.0e-07 57.4 35 80.0


User provided reference genes

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