Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0788 Trochodendron aralioides HOM05D000162 ORTHO05D003288 1.1e-142 510.0 259 100.0
Migut.F00854 Erythranthe guttata HOM05D000162 ORTHO05D000090 8.6e-15 85.1 98 41.8
Migut.M00051 Erythranthe guttata HOM05D000162 ORTHO05D000090 9.5e-14 81.6 109 41.3
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 1.6e-13 80.9 79 50.6
arahy.Tifrunner.gnm1.ann1.U8UX16 Arachis hypogaea HOM05D000239 ORTHO05D009715 3.6e-13 79.7 75 52.0
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 4.7e-13 79.3 85 42.4
AUR62000690 Chenopodium quinoa HOM05D000162 ORTHO05D003288 8.0e-13 78.6 94 44.7
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.4e-12 77.8 94 42.6
Nitab4.5_0000956g0130 Nicotiana tabacum HOM05D011051 ORTHO05D003288 1.8e-12 77.4 73 49.3
Nitab4.5_0006390g0090 Nicotiana tabacum HOM05D011051 ORTHO05D003288 1.8e-12 77.4 61 59.0
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 5.2e-12 75.9 98 37.8
Medtr1g091880 Medicago truncatula HOM05D008100 ORTHO05D009715 5.2e-12 75.9 80 43.8
arahy.Tifrunner.gnm1.ann1.M2HM0V Arachis hypogaea HOM05D018308 ORTHO05D003288 6.8e-12 75.5 125 32.0
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 6.8e-12 75.5 104 38.5
ECA238G1168 Erigeron canadensis HOM05D000162 ORTHO05D000090 8.9e-12 75.1 77 42.9
HanXRQChr13g0420261 Helianthus annuus HOM05D022346 ORTHO05D003288 8.9e-12 75.1 104 36.5
Lsat_1_v5_gn_3_95641 Lactuca sativa HOM05D000162 ORTHO05D000090 1.5e-11 74.3 84 48.8
arahy.Tifrunner.gnm1.ann1.90GDKS Arachis hypogaea HOM05D008100 ORTHO05D009715 2.0e-11 73.9 73 47.9
AUR62000678 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.0e-11 73.9 94 42.6
Sabra02G0034700 Salix brachista HOM05D017826 ORTHO05D003288 2.6e-11 73.6 104 34.6
QL03p013262 Quercus lobata HOM05D000162 ORTHO05D000090 4.4e-11 72.8 72 45.8
Rhsim02G0051600 Rhododendron simsii HOM05D026694 ORTHO05D003288 4.4e-11 72.8 89 37.1
Migut.G01062 Erythranthe guttata HOM05D040971 ORTHO05D003288 5.7e-11 72.4 96 38.5
AUR62000710 Chenopodium quinoa HOM05D000162 ORTHO05D003288 7.5e-11 72.0 94 42.6
TPR.G9763 Trifolium pratense HOM05D008100 ORTHO05D009715 7.5e-11 72.0 80 40.0
AUR62000649 Chenopodium quinoa HOM05D000162 ORTHO05D003288 9.8e-11 71.6 101 39.6
AUR62000666 Chenopodium quinoa HOM05D000162 ORTHO05D003288 9.8e-11 71.6 101 39.6
Rhsim02G0033800 Rhododendron simsii HOM05D026694 ORTHO05D003288 9.8e-11 71.6 92 37.0
EL10Ac4g09525 Beta vulgaris HOM05D000162 ORTHO05D000090 2.2e-10 70.5 87 37.9
EL10Ac4g09526 Beta vulgaris HOM05D000162 ORTHO05D003288 2.2e-10 70.5 87 37.9
AUR62005166 Chenopodium quinoa HOM05D001413 ORTHO05D003288 2.8e-10 70.1 110 38.2
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 2.8e-10 70.1 110 34.5
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 4.9e-10 69.3 53 62.3
AUR62017647 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.9e-10 69.3 94 42.6
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 6.3e-10 68.9 94 39.4
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 6.3e-10 68.9 94 40.4
AUR62005260 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.1e-09 68.2 94 39.4
Peaxi162Scf00342g00098 Petunia axillaris HOM05D011051 ORTHO05D003288 1.1e-09 68.2 77 40.3
RcHm_v2.0_Chr5g0074181 Rosa chinensis HOM05D009709 ORTHO05D003288 1.1e-09 68.2 85 42.4
AUR62000650 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.4e-09 67.8 112 38.4
Psat6g146320 Pisum sativum HOM05D008100 ORTHO05D009715 1.4e-09 67.8 80 36.2
arahy.Tifrunner.gnm1.ann1.8PB8XJ Arachis hypogaea HOM05D008100 ORTHO05D009715 1.8e-09 67.4 80 41.2
AUR62005214 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.8e-09 67.4 94 40.4
ATR0691G117 Amborella trichopoda HOM05D007390 ORTHO05D009114 3.2e-09 66.6 78 35.9
CSS0026088 Camellia sinensis var. sinensis HOM05D009709 ORTHO05D003288 5.4e-09 65.9 74 48.6
arahy.Tifrunner.gnm1.ann1.2SML7K Arachis hypogaea HOM05D000162 ORTHO05D000090 1.6e-08 64.3 76 44.7
arahy.Tifrunner.gnm1.ann1.KQ42YR Arachis hypogaea HOM05D018308 ORTHO05D003288 1.6e-08 64.3 122 29.5
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 1.6e-08 64.3 94 37.2
BolC6t40313H Brassica oleracea HOM05D006918 ORTHO05D008525 1.6e-08 64.3 94 37.2
AUR62000665 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.6e-08 64.3 112 37.5
HanXRQChr08g0216881 Helianthus annuus HOM05D022251 ORTHO05D003288 1.6e-08 64.3 63 47.6
ClCG09G021740 Citrullus lanatus HOM05D016535 ORTHO05D000090 2.0e-08 63.9 98 31.6
FvH4_3g42430 Fragaria vesca HOM05D000162 ORTHO05D000090 2.0e-08 63.9 111 36.9
BcaC08g47471 Brassica carinata HOM05D006918 ORTHO05D008525 2.7e-08 63.5 94 37.2
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 2.7e-08 63.5 94 37.2
PSO585G0048 Papaver somniferum HOM05D020193 ORTHO05D011376 2.7e-08 63.5 90 34.4
AUR62000680 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.5e-08 63.2 98 37.8
arahy.Tifrunner.gnm1.ann1.ZBV59A Arachis hypogaea HOM05D008100 ORTHO05D009715 4.5e-08 62.8 80 38.8
AUR62000844 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.5e-08 62.8 96 35.4
FvH4_3g31580 Fragaria vesca HOM05D009709 ORTHO05D003288 4.5e-08 62.8 65 43.1
CARHR048230 Cardamine hirsuta HOM05D038018 ORTHO05D003288 5.9e-08 62.4 60 48.3
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 7.8e-08 62.0 89 33.7
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 7.8e-08 62.0 124 33.1
FvH4_3g38471 Fragaria vesca HOM05D009709 ORTHO05D003288 7.8e-08 62.0 85 41.2
HanXRQChr15g0491421 Helianthus annuus HOM05D022346 ORTHO05D003288 7.8e-08 62.0 104 32.7
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 1.0e-07 61.6 98 33.7
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 1.0e-07 61.6 98 32.7
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 1.0e-07 61.6 98 33.7
Gorai.011G151100 Gossypium raimondii HOM05D000162 ORTHO05D003288 1.0e-07 61.6 59 47.5
RcHm_v2.0_Chr5g0069571 Rosa chinensis HOM05D009709 ORTHO05D010307 1.0e-07 61.6 103 36.9
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.3e-07 61.2 81 35.8
QL07p033370 Quercus lobata HOM05D020603 ORTHO05D019575 1.3e-07 61.2 78 33.3
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 1.7e-07 60.8 98 32.7
AUR62005276 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.7e-07 60.8 112 35.7
AUR62005284 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.7e-07 60.8 74 45.9
Cc07_g18940 Coffea canephora HOM05D000162 ORTHO05D000090 1.7e-07 60.8 88 42.0
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 1.7e-07 60.8 82 37.8
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 1.7e-07 60.8 72 40.3
Medtr8g107050 Medicago truncatula HOM05D008100 ORTHO05D009715 1.7e-07 60.8 82 39.0
Rhsim04G0189500 Rhododendron simsii HOM05D015516 ORTHO05D020960 1.7e-07 60.8 62 46.8
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 2.3e-07 60.5 79 36.7
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 2.3e-07 60.5 63 38.1
Eucgr.A00833 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.3e-07 60.5 59 45.8
FvH4_3g39940 Fragaria vesca HOM05D000162 ORTHO05D000090 2.3e-07 60.5 73 43.8
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 2.3e-07 60.5 72 44.4
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 2.3e-07 60.5 81 35.8
ECA240G3581 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-07 60.1 104 31.7
HanXRQChr07g0205001 Helianthus annuus HOM05D000162 ORTHO05D000090 2.9e-07 60.1 85 40.0
QL03p009030 Quercus lobata HOM05D000162 ORTHO05D000090 2.9e-07 60.1 73 38.4
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 2.9e-07 60.1 124 33.1
C04p29110 Brassica napus HOM05D000162 ORTHO05D003288 3.9e-07 59.7 104 30.8
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 3.9e-07 59.7 79 40.5
RcHm_v2.0_Chr5g0075791 Rosa chinensis HOM05D000162 ORTHO05D003288 3.9e-07 59.7 104 32.7
arahy.Tifrunner.gnm1.ann1.0N6WQ2 Arachis hypogaea HOM05D000855 ORTHO05D008530 5.0e-07 59.3 95 34.7
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 5.0e-07 59.3 83 38.6
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 5.0e-07 59.3 95 36.8
Prupe.6G087600 Prunus persica HOM05D000162 ORTHO05D000090 5.0e-07 59.3 72 40.3
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 6.6e-07 58.9 65 41.5
SMO339G0004 Selaginella moellendorffii HOM05D003689 ORTHO05D008530 6.6e-07 58.9 97 35.1
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 6.6e-07 58.9 87 31.0
SGA_v2.0_scaffold19G08834 Striga asiatica HOM05D000162 ORTHO05D000090 6.6e-07 58.9 87 35.6
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 6.6e-07 58.9 74 41.9
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 8.6e-07 58.5 108 34.3
FAN11G2462 Fragaria x ananassa HOM05D009709 ORTHO05D003288 8.6e-07 58.5 93 31.2
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 1.1e-06 58.2 83 37.3
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 1.1e-06 58.2 99 30.3
Ca_07235_v3 Cicer arietinum L. HOM05D008100 ORTHO05D009715 1.1e-06 58.2 78 38.5
FAN11G3989 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.1e-06 58.2 96 37.5
Potri.019G062332 Populus trichocarpa HOM05D024593 ORTHO05D010307 1.1e-06 58.2 75 41.3
RcHm_v2.0_Chr5g0073761 Rosa chinensis HOM05D000162 ORTHO05D000090 1.1e-06 58.2 68 42.6
vmacro13801 Vaccinium macrocarpon HOM05D026694 ORTHO05D003288 1.1e-06 58.2 61 44.3
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 1.5e-06 57.8 82 31.7
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 1.5e-06 57.8 82 31.7
AUR62005290 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.5e-06 57.8 59 50.8
FvH4_3g39890 Fragaria vesca HOM05D000162 ORTHO05D000090 1.5e-06 57.8 72 41.7
FAN21G3095 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-06 57.8 72 41.7
FAN21G3177 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-06 57.8 72 41.7
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 1.5e-06 57.8 76 38.2
QL03p014360 Quercus lobata HOM05D000315 ORTHO05D000090 1.5e-06 57.8 47 59.6
FAN16G0919 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.9e-06 57.4 92 37.0
HanXRQChr09g0260571 Helianthus annuus HOM05D007426 ORTHO05D009167 1.9e-06 57.4 52 42.3
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 2.5e-06 57.0 82 30.5
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 2.5e-06 57.0 82 30.5
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 2.5e-06 57.0 124 31.5
HanXRQChr13g0420271 Helianthus annuus HOM05D016049 ORTHO05D003288 2.5e-06 57.0 86 41.9
Os02g0321000 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 2.5e-06 57.0 92 33.7
RcHm_v2.0_Chr5g0071481 Rosa chinensis HOM05D000162 ORTHO05D000090 2.5e-06 57.0 72 40.3
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 3.3e-06 56.6 75 37.3
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 3.3e-06 56.6 79 39.2
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 3.3e-06 56.6 79 39.2
AUR62005306 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.3e-06 56.6 94 37.2
FAN16G1810 Fragaria x ananassa HOM05D001724 ORTHO05D010307 3.3e-06 56.6 48 54.2
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 3.3e-06 56.6 70 38.6
AUR62000691 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.3e-06 56.2 94 36.2
FAN11G1276 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.3e-06 56.2 75 38.7
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 4.3e-06 56.2 67 41.8
Nitab4.5_0001056g0080 Nicotiana tabacum HOM05D006556 ORTHO05D008146 4.3e-06 56.2 99 30.3
RcHm_v2.0_Chr5g0077521 Rosa chinensis HOM05D000162 ORTHO05D000090 4.3e-06 56.2 63 41.3
Sabra05G0084800 Salix brachista HOM05D006556 ORTHO05D008146 4.3e-06 56.2 96 28.1
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 4.3e-06 56.2 80 38.8
SGA_v2.0_scaffold225G43016 Striga asiatica HOM05D000162 ORTHO05D000090 4.3e-06 56.2 85 32.9
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 5.6e-06 55.8 82 31.7
BolC1t04080H Brassica oleracea HOM05D000162 ORTHO05D003288 5.6e-06 55.8 94 28.7
Nitab4.5_0000428g0460 Nicotiana tabacum HOM05D011051 ORTHO05D003288 5.6e-06 55.8 42 59.5
Oeu003964.1 Olea europaea HOM05D006556 ORTHO05D008146 5.6e-06 55.8 98 31.6
PSO675G3325 Papaver somniferum HOM05D016375 ORTHO05D011376 5.6e-06 55.8 66 36.4
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 5.6e-06 55.8 53 49.1
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 5.6e-06 55.8 82 30.5
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 5.6e-06 55.8 87 26.4
Actinidia04475 Actinidia chinensis HOM05D000162 ORTHO05D000090 7.3e-06 55.5 74 43.2
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 7.3e-06 55.5 104 31.7
AUR62005303 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.3e-06 55.5 94 36.2
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 7.3e-06 55.5 99 32.3
Potri.005G102400 Populus trichocarpa HOM05D006556 ORTHO05D008146 7.3e-06 55.5 96 28.1
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 7.3e-06 55.5 95 30.5
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 7.3e-06 55.5 82 36.6
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 9.5e-06 55.1 96 31.2
EL10Ac4g09649 Beta vulgaris HOM05D000140 ORTHO05D000087 9.5e-06 55.1 48 52.1
EL10Ac4g09814 Beta vulgaris HOM05D000162 ORTHO05D000090 9.5e-06 55.1 68 38.2
AUR62000614 Chenopodium quinoa HOM05D000162 ORTHO05D000090 9.5e-06 55.1 89 34.8
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 9.5e-06 55.1 47 57.4
ECA238G4369 Erigeron canadensis HOM05D000891 ORTHO05D000761 9.5e-06 55.1 95 29.5
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 9.5e-06 55.1 81 32.1
FAN25G2751 Fragaria x ananassa HOM05D009709 ORTHO05D003288 9.5e-06 55.1 65 41.5
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 9.5e-06 55.1 54 48.1
Medtr6g068820 Medicago truncatula HOM05D000162 ORTHO05D009715 9.5e-06 55.1 63 38.1
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 9.5e-06 55.1 97 32.0


User provided reference genes

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