Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 4.3e-127 458.0 227 100.0
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 1.3e-14 84.3 56 69.6
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 4.9e-14 82.4 63 60.3
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 4.1e-13 79.3 55 67.3
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 9.2e-13 78.2 57 64.9
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 9.2e-13 78.2 63 58.7
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.2e-12 77.8 55 67.3
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 5.9e-12 75.5 62 56.5
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 7.8e-12 75.1 55 65.5
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 7.8e-12 75.1 55 61.8
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 7.8e-12 75.1 55 65.5
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 2.3e-11 73.6 56 57.1
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 3.9e-11 72.8 61 55.7
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 5.0e-11 72.4 60 60.0
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 5.0e-11 72.4 55 58.2
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 8.6e-11 71.6 55 61.8
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.5e-10 70.9 54 63.0
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 1.5e-10 70.9 62 54.8
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.9e-10 70.5 56 58.9
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.9e-10 70.5 54 66.7
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 3.3e-10 69.7 57 61.4
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 3.3e-10 69.7 55 58.2
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 4.3e-10 69.3 58 56.9
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 9.5e-10 68.2 57 57.9
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 1.6e-09 67.4 56 51.8
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 1.6e-09 67.4 63 55.6
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 2.1e-09 67.0 56 55.4
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 2.1e-09 67.0 54 61.1
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 2.1e-09 67.0 54 61.1
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.1e-09 67.0 58 55.2
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.6e-09 66.2 55 56.4
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.6e-09 66.2 57 54.4
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 3.6e-09 66.2 55 56.4
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 4.7e-09 65.9 57 52.6
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 6.2e-09 65.5 57 54.4
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 6.2e-09 65.5 54 59.3
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 6.2e-09 65.5 60 56.7
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 1.0e-08 64.7 58 50.0
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.0e-08 64.7 60 56.7
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.8e-08 63.9 58 51.7
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.8e-08 63.9 55 56.4
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.3e-08 63.5 47 61.7
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 3.1e-08 63.2 55 50.9
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 3.1e-08 63.2 55 56.4
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 4.0e-08 62.8 64 53.1
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 5.2e-08 62.4 65 49.2
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 5.2e-08 62.4 54 53.7
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 5.2e-08 62.4 55 56.4
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 6.8e-08 62.0 82 43.9
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 8.9e-08 61.6 64 43.8
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 8.9e-08 61.6 64 51.6
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.2e-07 61.2 55 52.7
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.2e-07 61.2 55 49.1
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 1.5e-07 60.8 62 50.0
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 1.5e-07 60.8 55 47.3
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 1.5e-07 60.8 56 55.4
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 2.6e-07 60.1 55 47.3
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 3.4e-07 59.7 72 43.1
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 3.4e-07 59.7 54 53.7
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 5.8e-07 58.9 54 50.0
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 7.5e-07 58.5 58 48.3
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 7.5e-07 58.5 58 48.3
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 9.8e-07 58.2 56 48.2
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 1.7e-06 57.4 55 43.6
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 2.2e-06 57.0 58 43.1
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 2.9e-06 56.6 57 49.1
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 4.9e-06 55.8 48 58.3
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 4.9e-06 55.8 78 42.3
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 6.4e-06 55.5 48 58.3
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 8.3e-06 55.1 55 49.1
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 8.3e-06 55.1 64 46.9
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 8.3e-06 55.1 55 50.9


User provided reference genes

Program Settings