Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1684.5 849 100.0
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1684.5 849 100.0
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1684.5 849 100.0
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1684.5 849 100.0
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1553.5 848 91.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1515.0 852 91.0
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1508.8 850 90.8
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1507.3 846 91.5
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1505.3 845 90.9
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1505.3 845 90.9
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1501.5 844 90.6
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1494.2 854 88.8
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1491.1 851 89.5
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1486.9 846 87.4
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1458.4 853 88.6
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1456.4 853 88.4
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1425.6 850 84.5
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1421.4 848 83.8
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 852 80.5
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1328.5 816 81.1
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1321.2 852 78.1
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1320.4 851 79.4
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1318.9 843 78.3
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1318.9 844 78.9
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 854 78.6
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1316.6 852 78.1
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 853 78.9
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 854 78.6
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1313.5 850 79.3
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 853 78.4
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1308.5 847 79.1
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 852 77.7
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 852 77.7
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 858 77.9
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 852 77.9
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1302.3 852 77.3
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1302.0 856 78.0
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 851 79.0
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1299.6 851 78.0
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 816 80.1
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 855 77.8
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 855 77.8
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 834 79.7
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 845 77.8
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1296.6 846 78.8
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1296.2 882 71.8
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1295.4 843 77.8
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1293.5 853 77.4
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 855 77.5
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1291.9 854 76.1
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 851 77.8
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 825 79.8
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1287.3 856 77.9
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1286.6 853 77.1
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 853 76.1
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1284.2 853 76.1
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 842 78.0
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 822 78.2
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 853 76.0
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 848 78.8
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 852 76.2
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 854 78.5
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 839 78.5
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1278.5 822 78.1
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 863 75.2
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 853 75.7
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 830 77.5
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 830 78.8
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 842 76.8
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 893 74.2
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 836 77.0
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1271.5 836 77.0
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 845 76.1
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 878 74.3
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1268.4 833 77.2
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 821 78.0
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1267.3 841 76.2
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1266.9 821 79.2
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1266.1 843 76.4
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1265.8 837 76.9
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1265.4 821 78.9
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 813 78.4
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 823 77.2
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 832 76.6
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 810 77.8
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 799 79.2
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 829 78.3
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1258.8 848 76.3
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1258.8 832 76.3
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 869 74.1
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 846 76.1
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 816 78.1
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 853 75.5
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 839 75.6
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1249.6 837 76.9
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 834 77.7
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 823 76.4
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1241.1 818 77.0
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1240.3 845 76.6
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1238.8 893 70.3
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1238.8 842 77.1
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1237.6 843 76.2
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1229.9 841 75.6
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1229.2 822 75.2
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1225.7 837 75.6
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1223.0 820 75.2
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1223.0 823 77.6
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1219.1 814 75.4
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1212.6 878 72.0
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1211.8 874 72.1
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1205.7 807 75.1
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1205.7 800 75.5
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1202.6 828 74.0
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1202.2 854 73.0
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1201.4 841 69.1
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1197.6 819 74.5
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1196.0 773 79.9
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1195.3 784 78.6
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1193.7 837 72.9
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1192.9 806 74.7
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1190.6 823 76.3
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1187.6 830 74.1
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1183.3 819 75.6
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1181.8 823 73.8
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1180.6 814 73.8
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1172.9 837 73.7
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1171.0 812 72.8
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1168.3 851 72.5
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1163.7 703 81.5
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1154.8 883 69.2
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1154.4 754 76.8
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1147.5 839 70.6
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1144.0 834 71.0
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1143.6 818 74.3
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1137.1 811 70.2
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1134.0 813 70.8
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1114.8 809 69.8
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1113.6 808 69.7
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1109.7 888 66.3
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1105.9 780 71.0
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1104.0 735 78.1
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 4.6e-291 1004.6 834 65.2
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 2.1e-267 926.0 601 75.5
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 3.0e-266 922.2 637 70.0
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 7.6e-254 880.9 547 81.4
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 9.9e-254 880.6 601 72.2
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.8e-247 859.8 525 80.0
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.4e-247 859.4 847 58.6
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.5e-164 581.6 731 49.5
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 2.1e-142 510.8 458 56.8
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.0e-136 491.9 359 77.2
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 8.7e-125 452.2 332 69.3
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.5e-108 398.3 315 73.7
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.0e-96 359.0 405 51.9
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.4e-90 338.6 269 66.5
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.1e-82 310.5 580 43.6
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 1.5e-63 248.8 139 80.6
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.9e-58 231.9 156 75.0
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 9.9e-44 183.0 163 55.8
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 1.1e-37 162.9 498 28.7
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 8.7e-32 143.3 76 86.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.3e-31 140.2 472 26.3
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.3e-29 134.0 456 26.8
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.6e-25 122.5 63 90.5
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 3.9e-24 117.9 96 63.5
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.5e-23 115.2 467 26.8
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.3e-22 112.8 410 28.3
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.4e-21 109.4 72 68.1
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 7.9e-17 93.6 129 43.4
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-16 92.8 266 28.2
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 5.1e-16 90.9 220 31.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.3e-11 76.3 76 48.7
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 3.2e-10 71.6 116 37.9
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-08 63.9 88 39.8
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 9.7e-07 60.1 38 76.3


User provided reference genes

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