Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 1.2e-305 1052.4 524 100.0
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.7e-243 845.9 523 79.2
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 9.2e-242 840.1 523 80.7
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 3.6e-238 828.2 530 78.3
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 3.5e-233 811.6 526 77.2
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.9e-202 709.5 525 69.1
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 3.9e-200 701.8 526 69.8
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 3.9e-200 701.8 528 68.6
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 1.1e-199 700.3 528 68.4
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 9.0e-197 690.6 526 67.5
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 9.0e-197 690.6 526 67.5
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 9.0e-197 690.6 526 67.5
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.4e-168 597.0 546 58.2
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 7.4e-167 591.3 545 58.3
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 8.3e-150 534.6 528 53.0
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 2.6e-135 486.5 535 50.1
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 2.5e-130 469.9 535 47.3
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 4.3e-130 469.2 535 47.3
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 5.6e-130 468.8 544 46.7
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 7.3e-130 468.4 547 46.8
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.6e-129 467.2 532 47.6
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 2.8e-129 466.5 524 46.9
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 3.6e-129 466.1 540 45.9
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 4.7e-129 465.7 527 46.3
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.4e-128 464.2 527 45.7
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.8e-128 463.8 541 44.9
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.8e-128 463.8 534 47.0
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 3.1e-128 463.0 527 47.2
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 6.8e-128 461.8 538 45.9
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 3.4e-127 459.5 534 47.6
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 4.4e-127 459.1 542 46.3
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 5.8e-127 458.8 532 47.2
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 7.5e-127 458.4 528 45.5
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 7.5e-127 458.4 529 46.3
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.3e-126 457.6 538 46.3
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.7e-126 457.2 534 46.4
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.7e-126 456.1 542 44.6
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.7e-126 456.1 532 46.4
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 6.4e-126 455.3 528 45.3
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 6.4e-126 455.3 544 45.4
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 3.2e-125 453.0 528 45.1
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.1e-125 452.6 540 44.1
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 4.1e-125 452.6 532 46.2
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 9.2e-125 451.4 537 46.9
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.6e-124 450.7 534 45.5
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.6e-124 450.7 537 45.6
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.6e-124 450.7 543 43.3
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.6e-124 450.7 537 45.3
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 2.7e-124 449.9 533 45.2
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 2.7e-124 449.9 537 44.5
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 3.5e-124 449.5 532 46.8
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 3.5e-124 449.5 529 45.0
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 4.6e-124 449.1 529 44.4
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 6.0e-124 448.7 532 47.0
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 6.0e-124 448.7 525 46.3
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 7.8e-124 448.4 532 46.4
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.3e-123 447.6 528 46.0
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 3.0e-123 446.4 534 44.9
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 3.9e-123 446.0 530 45.3
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 8.6e-123 444.9 533 45.4
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.5e-122 444.1 553 43.6
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.5e-122 443.4 535 45.8
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 5.6e-122 442.2 534 45.7
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.6e-122 442.2 527 46.1
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 5.6e-122 442.2 530 44.7
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 9.5e-122 441.4 530 45.7
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-121 441.0 527 45.9
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-121 441.0 530 45.7
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.4e-120 437.6 538 42.0
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.8e-120 437.2 530 45.1
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 6.8e-120 435.3 527 45.9
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.2e-119 434.5 525 44.2
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.2e-119 434.5 537 44.3
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 4.4e-119 432.6 535 43.9
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.3e-118 431.0 538 43.7
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 4.9e-118 429.1 533 43.3
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 6.4e-118 428.7 537 43.6
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 3.5e-116 422.9 534 43.4
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 5.1e-115 419.1 526 43.0
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 2.5e-114 416.8 535 43.9
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 5.8e-111 405.6 443 49.2
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 4.9e-110 402.5 530 42.5
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.4e-109 400.2 536 42.4
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 3.2e-109 399.8 440 48.0
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 2.1e-108 397.1 535 42.2
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 3.9e-107 392.9 536 41.4
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 7.3e-106 388.7 533 42.0
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 6.9e-104 382.1 527 40.6
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 9.9e-103 378.3 536 41.0
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.3e-102 377.9 527 40.6
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.9e-98 364.0 533 40.7
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 7.3e-98 362.1 533 40.5
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 7.1e-93 345.5 417 49.2
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 8.7e-91 338.6 549 37.5
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.6e-89 334.3 540 38.3
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 1.6e-89 334.3 540 38.0
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 1.1e-85 321.6 292 60.3
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 5.5e-85 319.3 526 37.3
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 6.0e-84 315.8 526 35.4
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 3.9e-83 313.2 197 76.6
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 3.9e-83 313.2 423 42.6
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.3e-82 309.7 515 37.1
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.6e-82 309.3 585 35.4
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 3.8e-78 296.6 423 39.2
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 9.7e-74 282.0 301 47.8
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.6e-73 281.2 543 33.1
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.6e-71 273.9 505 34.7
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.3e-70 271.6 332 44.9
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 5.0e-70 269.6 481 35.6
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 2.5e-69 267.3 278 46.0
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.6e-68 264.6 614 30.6
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.1e-68 264.2 574 32.8
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.5e-63 246.5 289 46.0
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 5.5e-61 239.6 418 37.3
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 9.7e-58 228.8 296 48.3
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.4e-56 224.2 222 48.6
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 1.2e-52 211.8 329 40.1
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 4.4e-50 203.4 555 29.0
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 5.7e-50 203.0 531 28.6
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 2.2e-49 201.1 574 28.9
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.4e-48 198.4 126 80.2
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 5.7e-42 176.4 105 75.2
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 2.2e-38 164.5 573 26.2
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 1.3e-33 148.7 534 26.4
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 8.3e-25 119.4 317 26.8
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 5.8e-18 96.7 98 50.0
BolC3t20315H Brassica oleracea HOM05D002338 ORTHO05D006102 2.4e-16 91.3 101 54.5
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.7e-15 87.8 200 32.5
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.0e-14 85.9 178 32.6
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.7e-14 85.1 67 53.7
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 6.6e-14 83.2 157 33.8
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.9e-13 81.6 128 35.9
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 9.5e-13 79.3 163 33.1
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-11 75.9 96 42.7
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 1.8e-11 75.1 56 53.6
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 4.4e-10 70.5 71 50.7
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 1.7e-09 68.6 204 27.5
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.1e-08 63.9 53 56.6
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 7.0e-08 63.2 66 51.5
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 3.0e-06 57.8 156 25.0
Migut.K00095 Erythranthe guttata HOM05D001573 ORTHO05D001660 3.0e-06 57.8 221 22.2
SalBow6G2437 Salvia bowleyana HOM05D001573 ORTHO05D001660 3.0e-06 57.8 221 22.6
SalBow6G3994 Salvia bowleyana HOM05D001573 ORTHO05D001660 3.0e-06 57.8 221 22.6
SGA_v2.0_scaffold273G46434 Striga asiatica HOM05D001573 ORTHO05D001660 3.0e-06 57.8 221 22.2
MSTRG.10811 Avicennia marina HOM05D001573 ORTHO05D001660 3.9e-06 57.4 221 22.2
Oeu008166.1 Olea europaea HOM05D001573 ORTHO05D001660 3.9e-06 57.4 250 22.0
Migut.J01740 Erythranthe guttata HOM05D001573 ORTHO05D001660 5.1e-06 57.0 221 22.6
MSTRG.6416 Avicennia marina HOM05D001573 ORTHO05D001660 6.6e-06 56.6 221 22.2


User provided reference genes

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