Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 6.2e-99 364.0 168 100.0
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 2.0e-97 359.0 168 98.2
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 9.9e-97 356.7 168 97.6
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 9.9e-97 356.7 168 97.0
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 9.9e-97 356.7 168 97.0
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 9.9e-97 356.7 168 97.0
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 1.3e-96 356.3 168 96.4
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 4.9e-96 354.4 168 96.4
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 4.9e-96 354.4 168 96.4
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 8.4e-96 353.6 168 96.4
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 1.1e-95 353.2 168 95.8
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 1.4e-95 352.8 168 95.8
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 2.7e-94 348.6 178 91.6
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.8e-90 335.9 168 91.7
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.9e-88 328.6 168 90.5
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 2.1e-75 285.8 136 94.1
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 2.5e-71 272.3 126 96.0
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 4.6e-70 268.1 168 74.4
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 1.0e-69 266.9 168 71.4
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 2.3e-69 265.8 168 70.8
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 2.3e-69 265.8 167 71.3
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 3.9e-69 265.0 168 71.4
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 6.7e-69 264.2 168 70.8
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 1.1e-68 263.5 168 70.2
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.5e-68 263.1 168 70.8
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.5e-68 263.1 168 69.6
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.9e-68 262.7 168 70.2
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 3.3e-68 261.9 168 69.6
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 3.3e-68 261.9 168 70.8
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 70.8
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 9.6e-68 260.4 168 70.2
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 2.1e-67 259.2 168 70.8
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 2.8e-67 258.8 168 70.2
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 2.8e-67 258.8 168 70.2
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 2.8e-67 258.8 168 69.0
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 3.7e-67 258.5 168 70.8
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 6.3e-67 257.7 168 69.0
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.1e-66 256.9 168 70.2
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.8e-66 256.1 168 70.2
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.8e-66 256.1 168 70.2
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.8e-66 256.1 168 70.2
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 3.1e-66 255.4 168 69.0
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 3.1e-66 255.4 168 69.0
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 4.1e-66 255.0 168 68.5
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 9.0e-66 253.8 165 69.1
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 9.0e-66 253.8 168 67.9
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 69.0
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 2.0e-65 252.7 168 66.7
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.6e-65 252.3 168 69.0
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 3.4e-65 251.9 168 66.7
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 3.4e-65 251.9 168 69.6
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 5.9e-65 251.1 168 67.9
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 7.6e-65 250.8 165 68.5
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 7.6e-65 250.8 168 68.5
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.3e-64 250.0 168 66.7
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 3.8e-64 248.4 175 67.4
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 8.4e-64 247.3 168 67.9
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 8.4e-64 247.3 168 67.9
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 4.2e-63 245.0 168 67.3
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 5.5e-63 244.6 167 66.5
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 5.5e-63 244.6 165 69.1
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 7.2e-63 244.2 168 67.3
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 7.2e-63 244.2 167 67.1
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.2e-62 243.4 168 67.3
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 1.2e-62 243.4 168 66.1
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.6e-62 243.0 168 66.7
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.6e-62 243.0 168 65.5
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 2.7e-62 242.3 168 65.5
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 2.7e-62 242.3 168 66.7
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 6.1e-62 241.1 168 63.1
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 6.1e-62 241.1 168 63.7
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 7.9e-62 240.7 165 67.9
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 7.9e-62 240.7 165 64.2
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 1.0e-61 240.4 167 64.1
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 2.3e-61 239.2 168 63.1
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 3.0e-61 238.8 168 64.9
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 3.9e-61 238.4 168 65.5
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 3.9e-61 238.4 168 65.5
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 6.7e-61 237.7 168 66.7
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 6.7e-61 237.7 168 63.7
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 8.7e-61 237.3 168 63.1
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.5e-60 235.7 167 62.3
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 3.3e-60 235.3 168 65.5
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.3e-60 235.0 167 62.9
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 4.3e-60 235.0 168 64.3
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 5.7e-60 234.6 167 62.3
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 7.4e-60 234.2 168 63.1
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.2e-59 232.6 168 65.5
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 2.2e-59 232.6 168 67.3
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 6.3e-59 231.1 190 58.9
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.4e-58 229.9 220 51.8
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 1.4e-58 229.9 165 64.2
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 1.8e-58 229.6 168 63.1
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 1.8e-58 229.6 165 64.8
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.4e-58 229.2 160 63.1
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.6e-57 225.7 168 60.7
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 4.5e-57 224.9 168 63.1
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.0e-56 223.8 180 57.8
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 5.0e-56 221.5 168 61.3
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.4e-55 219.9 190 56.8
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.6e-54 216.5 167 59.9
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 6.1e-54 214.5 165 60.0
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 1.0e-53 213.8 204 52.0
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.8e-53 213.0 168 57.1
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 2.3e-53 212.6 190 54.2
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 1.1e-52 210.3 167 59.9
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 4.1e-50 201.8 138 66.7
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.2e-49 200.3 131 66.4
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.6e-49 199.1 126 68.3
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-47 193.7 176 51.7
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 3.2e-47 192.2 183 57.9
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.1e-46 189.5 168 53.0
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 2.1e-46 189.5 167 54.5
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 2.3e-45 186.0 168 53.0
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 3.9e-45 185.3 177 49.7
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 3.7e-43 178.7 122 64.8
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.6e-41 173.3 165 52.1
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 4.5e-41 171.8 116 65.5
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 7.7e-41 171.0 168 50.6
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 1.2e-38 163.7 166 48.8
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 3.6e-38 162.2 168 49.4
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 2.3e-37 159.5 179 46.4
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 6.7e-37 157.9 165 50.3
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 6.7e-37 157.9 165 49.7
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.5e-36 156.8 169 46.7
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 2.6e-36 156.0 99 72.7
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.3e-35 153.7 135 52.6
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.7e-35 153.3 134 53.0
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.2e-35 152.9 166 48.2
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 2.8e-35 152.5 156 53.2
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 6.3e-35 151.4 117 59.8
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.4e-34 150.2 151 51.0
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.5e-33 145.6 131 51.9
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 6.5e-32 141.4 98 62.2
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 6.5e-32 141.4 98 62.2
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 8.5e-32 141.0 128 50.8
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 5.7e-28 128.3 98 58.2
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.1e-23 114.0 165 37.6
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.6e-22 110.2 165 36.4
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 2.1e-22 109.8 98 58.2
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 4.7e-22 108.6 78 60.3
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.8e-21 106.7 127 40.2
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 2.3e-21 106.3 111 49.5
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.7e-20 101.7 95 50.5
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 1.2e-17 94.0 75 61.3
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 5.6e-15 85.1 170 32.9
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 7.3e-15 84.7 42 95.2
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 4.7e-14 82.0 41 92.7
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.8e-13 78.2 65 53.8
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.8e-13 78.2 65 53.8
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-12 77.4 68 51.5
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.2e-12 77.4 117 32.5
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.6e-12 76.3 60 56.7
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.4e-12 75.5 104 36.5
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.9e-11 72.0 60 55.0
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.3e-11 71.2 65 50.8
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.8e-10 70.1 65 49.2
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 2.0e-09 66.6 170 30.6
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 5.9e-09 65.1 45 62.2
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 4.3e-07 58.9 83 34.9
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 2.8e-06 56.2 40 62.5


User provided reference genes

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