Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 4.0e-248 860.9 421 100.0
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 8.8e-227 790.0 422 91.9
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 1.5e-226 789.3 421 90.7
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 3.3e-226 788.1 422 91.9
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 1.3e-225 786.2 422 91.5
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 2.8e-225 785.0 422 91.7
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.8e-224 782.3 422 91.2
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 2.0e-223 778.9 421 89.5
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 3.4e-223 778.1 421 89.8
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.7e-222 775.8 408 91.9
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 5.7e-194 681.0 419 78.3
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 5.4e-176 621.3 422 70.6
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 7.0e-176 620.9 335 88.1
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 9.2e-176 620.5 423 71.2
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.7e-175 619.0 422 70.1
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 3.9e-174 615.1 422 69.9
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 3.3e-173 612.1 419 71.1
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 9.5e-173 610.5 422 69.0
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 9.5e-173 610.5 422 69.7
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.1e-171 607.1 428 68.7
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 6.8e-171 604.4 422 70.6
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.2e-170 603.6 418 68.7
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.6e-170 602.4 418 68.9
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 3.4e-170 602.1 421 69.6
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.9e-168 596.3 416 69.5
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 5.4e-168 594.7 418 69.1
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 6.0e-167 591.3 422 66.6
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.7e-166 589.7 422 67.3
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.7e-166 589.7 416 66.8
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 6.6e-166 587.8 421 66.5
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.5e-165 586.6 419 68.5
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.8e-164 582.4 430 65.8
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.1e-163 580.5 419 66.6
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 1.4e-163 580.1 427 65.8
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 6.8e-163 577.8 419 66.3
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 1.2e-162 577.0 419 66.1
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.5e-162 576.6 420 66.4
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.5e-162 576.6 421 64.8
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 2.0e-162 576.2 423 66.2
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 2.6e-162 575.9 424 65.3
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 4.4e-162 575.1 419 64.9
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 5.8e-162 574.7 419 66.3
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 3.8e-161 572.0 424 65.3
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 4.9e-161 571.6 419 64.4
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 6.4e-161 571.2 405 67.9
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.1e-160 570.5 385 70.9
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 3.2e-160 568.9 433 64.4
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 5.4e-160 568.2 413 64.9
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 5.4e-160 568.2 423 65.0
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 7.1e-160 567.8 420 65.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 9.2e-160 567.4 419 65.6
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.6e-159 566.6 427 63.7
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 2.7e-159 565.8 420 65.0
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 6.0e-159 564.7 420 63.8
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.5e-157 560.1 421 63.9
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.3e-157 558.9 383 69.5
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.3e-157 558.9 442 63.6
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 3.3e-157 558.9 425 64.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.6e-156 556.6 421 64.4
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.8e-156 555.8 445 62.7
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 3.6e-156 555.4 298 86.9
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 3.6e-156 555.4 419 63.7
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.4e-155 553.5 429 64.1
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 3.1e-155 552.4 429 64.1
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 6.9e-155 551.2 420 64.0
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 9.0e-155 550.8 427 63.0
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 3.4e-154 548.9 425 64.5
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 3.4e-154 548.9 420 63.6
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 3.4e-154 548.9 475 59.6
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.3e-153 547.0 431 61.9
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.9e-153 545.0 419 63.2
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 2.4e-152 542.7 478 57.1
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 5.4e-152 541.6 415 62.2
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 7.1e-152 541.2 420 63.1
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.6e-151 540.0 416 64.4
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 2.1e-151 539.7 448 60.9
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 2.7e-151 539.3 419 62.8
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 7.8e-151 537.7 419 63.7
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.3e-150 537.0 390 65.4
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.3e-150 537.0 429 62.7
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.7e-150 536.6 432 60.9
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.9e-150 535.4 422 63.0
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 5.1e-150 535.0 413 61.7
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.5e-149 533.5 411 62.0
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.3e-149 532.3 422 61.1
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 7.3e-149 531.2 393 66.2
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 9.6e-149 530.8 415 61.0
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.8e-146 521.5 459 58.2
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 8.7e-142 507.7 418 58.9
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 3.7e-140 502.3 328 71.6
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 8.1e-140 501.1 419 60.1
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 8.1e-140 501.1 391 64.2
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 2.6e-138 496.1 432 59.7
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 3.0e-134 482.6 416 60.3
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 1.1e-133 480.7 415 58.8
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.4e-131 473.8 309 73.5
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.1e-128 464.2 316 66.5
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 4.2e-128 462.2 423 54.4
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 9.3e-128 461.1 299 68.9
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 5.1e-126 455.3 307 67.4
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.0e-121 441.0 335 61.8
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 8.5e-121 438.0 417 55.6
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.5e-121 438.0 328 64.3
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.2e-114 417.5 422 50.9
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 2.6e-114 416.4 411 51.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.0e-113 414.5 423 49.2
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 2.1e-111 406.8 409 49.1
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.0e-110 404.4 422 47.4
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.9e-105 386.3 314 61.5
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 4.4e-101 372.5 278 67.6
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.0e-98 363.6 296 60.8
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.9e-97 359.8 316 54.1
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 3.4e-85 319.7 277 61.7
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.7e-76 289.7 184 67.9
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 3.4e-69 266.5 449 35.9
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 1.9e-67 260.8 374 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 8.0e-63 245.4 228 49.1
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.1e-59 235.0 418 37.3
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 4.0e-54 216.5 556 30.8
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 1.0e-49 201.8 249 47.4
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.7e-44 184.5 192 47.9
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.2e-42 178.3 121 77.7
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 4.3e-40 169.9 130 63.8
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.2e-36 157.5 127 60.6
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.4e-30 137.5 116 56.9
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 3.4e-29 133.7 115 57.4
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 3.0e-25 120.6 256 34.0
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.6e-23 114.8 142 49.3
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 2.7e-18 97.4 105 44.8
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.1e-10 71.2 56 64.3
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 2.3e-09 67.8 118 40.7
BcaC09g52239 Brassica carinata HOM05D000538 ORTHO05D000614 2.2e-07 61.2 37 83.8
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 2.2e-07 61.2 38 68.4
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.7e-07 60.5 64 50.0


User provided reference genes

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