Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1486.1 759 100.0
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1391.3 759 93.3
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1391.3 759 93.3
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1385.2 759 93.0
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 0.0e+00 1384.4 760 93.2
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1371.3 759 92.1
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1371.3 759 92.1
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1370.1 761 92.1
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1370.1 761 92.1
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1361.7 759 91.3
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1361.7 759 91.3
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1313.9 759 88.7
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1294.3 759 87.0
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 0.0e+00 1287.7 759 87.1
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1276.9 705 92.9
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1251.9 759 84.2
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1230.7 761 82.4
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 0.0e+00 1228.4 784 81.5
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 0.0e+00 1148.3 755 78.0
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1142.1 761 78.4
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 3.1e-307 1058.1 761 73.6
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.4e-306 1054.7 760 74.1
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 1.2e-303 1046.2 751 71.1
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 3.6e-303 1044.6 762 69.9
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 3.9e-302 1041.2 762 73.0
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 3.9e-302 1041.2 762 73.0
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 4.4e-301 1037.7 758 70.7
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 1.7e-300 1035.8 755 69.4
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 4.8e-300 1034.2 750 69.7
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 6.3e-300 1033.9 758 70.3
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 2.0e-298 1028.9 753 69.6
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 2.5e-296 1021.9 762 67.7
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 7.2e-296 1020.4 750 68.5
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 9.4e-296 1020.0 751 69.0
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 9.4e-296 1020.0 750 68.7
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.2e-295 1019.6 772 68.4
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 2.1e-295 1018.8 727 74.0
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.0e-294 1016.5 750 68.4
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 5.2e-294 1014.2 750 68.4
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 6.7e-294 1013.8 752 68.8
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 6.7e-294 1013.8 760 67.8
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 2.0e-293 1012.3 755 67.5
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 2.6e-293 1011.9 758 68.3
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 9.7e-293 1010.0 748 67.8
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.3e-292 1009.6 752 68.4
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 3.7e-292 1008.1 748 68.4
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 3.1e-291 1005.0 747 68.0
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 3.1e-291 1005.0 756 68.1
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 7.0e-291 1003.8 755 67.0
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 1.2e-290 1003.0 758 68.5
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 4.5e-290 1001.1 762 66.3
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.3e-289 999.6 760 69.1
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 6.5e-289 997.3 752 66.9
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.9e-288 995.7 756 67.1
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 2.5e-288 995.3 750 68.3
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.2e-287 993.0 744 68.3
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 2.1e-287 992.3 760 67.4
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 4.7e-287 991.1 769 67.0
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.0e-286 989.9 760 66.7
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.0e-286 988.4 769 66.8
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 2.0e-285 985.7 756 66.7
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 2.0e-285 985.7 757 66.8
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 4.4e-285 984.6 759 66.1
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.7e-284 982.6 747 67.2
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 4.8e-284 981.1 741 67.7
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.8e-284 981.1 751 67.0
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.4e-283 979.5 757 67.0
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 5.3e-283 977.6 756 65.5
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.2e-282 976.5 801 63.9
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.7e-281 972.6 748 66.0
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 2.5e-280 968.8 757 65.3
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 7.2e-280 967.2 747 65.7
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 7.2e-280 967.2 753 65.3
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 1.2e-279 966.5 766 64.6
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 2.7e-279 965.3 756 66.1
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.8e-278 962.6 768 64.5
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 6.8e-278 960.7 752 66.1
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.6e-277 958.7 761 64.7
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 7.5e-277 957.2 757 64.6
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.2e-274 949.9 761 64.0
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.0e-274 949.1 710 67.7
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 4.5e-274 948.0 766 63.6
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 5.0e-273 944.5 745 64.7
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 7.2e-272 940.6 759 63.6
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 2.0e-269 932.6 756 64.3
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 2.6e-269 932.2 731 70.0
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 2.6e-269 932.2 746 63.7
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 4.1e-267 924.9 752 62.6
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 9.2e-267 923.7 746 63.1
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 6.6e-265 917.5 756 63.5
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.1e-264 916.8 762 63.0
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.1e-264 916.8 763 62.5
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.5e-264 916.4 756 63.4
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 9.5e-264 913.7 750 62.4
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.8e-263 912.1 762 62.6
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 3.6e-263 911.8 749 61.7
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.8e-262 909.4 762 62.2
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.4e-259 899.8 748 63.6
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.4e-259 899.0 535 85.0
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.1e-254 883.6 753 61.6
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.5e-253 879.8 748 61.4
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 2.9e-252 875.5 678 65.8
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.0e-250 869.4 769 60.3
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 2.0e-245 852.8 737 60.4
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 3.2e-243 845.5 625 68.5
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 9.5e-240 833.9 746 59.5
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 4.0e-238 828.6 766 56.8
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.7e-236 823.2 747 57.0
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 4.3e-232 808.5 816 53.6
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 7.3e-232 807.7 656 62.7
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 8.1e-231 804.3 763 56.1
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 4.8e-215 751.9 640 62.0
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 5.8e-213 745.0 746 53.2
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 3.9e-209 732.3 528 69.1
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.8e-204 715.7 533 66.6
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 5.1e-201 705.3 528 66.5
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 4.3e-200 702.2 746 50.8
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 5.3e-198 695.3 756 51.1
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 5.5e-195 685.3 763 49.3
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 5.3e-190 668.7 752 49.6
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 2.0e-184 650.2 567 61.7
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.3e-176 622.9 739 46.8
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 5.0e-156 555.8 763 44.3
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 3.4e-152 543.1 388 72.2
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 5.7e-152 542.3 607 48.3
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 7.5e-128 462.2 392 61.2
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 2.2e-111 407.5 345 59.4
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 3.0e-108 397.1 727 34.3
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 7.6e-104 382.5 474 47.7
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 4.9e-87 326.6 746 30.8
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 7.2e-78 296.2 227 63.4
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.7e-77 294.3 837 28.9
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 9.1e-65 252.7 222 62.6
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 6.7e-60 236.5 532 34.6
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 5.5e-46 190.3 227 50.2
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 5.5e-38 163.7 124 62.9
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 3.0e-36 157.9 193 49.2
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 4.4e-35 154.1 197 46.2
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 5.4e-33 147.1 136 56.6
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.6e-29 134.4 105 65.7
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 2.0e-27 128.6 229 37.6
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 9.8e-27 126.3 138 50.0
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.3e-26 125.9 102 60.8
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 3.7e-26 124.4 113 55.8
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.6e-24 119.0 80 72.5
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 2.3e-23 115.2 229 38.9
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 2.9e-18 98.2 80 63.8
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.4e-17 94.0 98 48.0
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.2e-16 92.8 293 28.7
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 2.1e-16 92.0 92 52.2
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.7e-15 89.0 75 57.3
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 6.8e-12 77.0 79 49.4
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.5e-11 75.9 73 56.2
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.5e-11 75.9 73 56.2
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 4.4e-11 74.3 67 55.2
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 9.9e-11 73.2 73 54.8
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 9.9e-11 73.2 88 44.3
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 6.4e-10 70.5 107 36.4
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 6.4e-10 70.5 56 64.3
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.4e-09 68.6 64 56.2
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 4.1e-09 67.8 63 57.1
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 3.3e-06 58.2 55 49.1
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 9.6e-06 56.6 57 56.1


User provided reference genes

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