Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g03680 Schrenkiella parvula HOM05D007696 ORTHO05D009719 4.4e-84 314.7 171 100.0
Thhalv10027967m.g Eutrema salsugineum HOM05D007696 ORTHO05D009719 3.9e-72 275.0 171 85.4
BcaB01g01733 Brassica carinata HOM05D007696 ORTHO05D009719 6.1e-70 267.7 171 83.6
AT1G61415 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 1.2e-60 236.9 171 77.2
CARHR051130 Cardamine hirsuta HOM05D007696 ORTHO05D009719 2.0e-60 236.1 171 76.0
A09p26940 Brassica napus HOM05D007696 ORTHO05D009719 9.8e-60 233.8 171 76.0
BraA09t38264Z Brassica rapa HOM05D007696 ORTHO05D009719 9.8e-60 233.8 171 76.0
THA.LOC104821847 Tarenaya hassleriana HOM05D007696 ORTHO05D009719 3.2e-58 228.8 170 71.8
AL2G14870 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 3.5e-57 225.3 170 75.3
AL2G14920 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 2.3e-56 222.6 171 73.1
BcaC04g21230 Brassica carinata HOM05D007696 ORTHO05D009719 1.9e-55 219.5 169 72.8
C09p34110 Brassica napus HOM05D007696 ORTHO05D009719 1.9e-55 219.5 169 72.8
BolC9t56248H Brassica oleracea HOM05D007696 ORTHO05D009719 1.9e-55 219.5 169 72.8
Carub.0002s0377 Capsella rubella HOM05D007696 ORTHO05D009719 2.1e-49 199.5 171 68.4
Manes.01G020300 Manihot esculenta HOM05D007696 ORTHO05D009719 4.3e-47 191.8 167 61.7
QL10p022430 Quercus lobata HOM05D007696 ORTHO05D009719 1.5e-44 183.3 167 55.1
Duzib068G0054 Durio zibethinus HOM05D007696 ORTHO05D009719 4.9e-43 178.3 167 55.7
Thecc.03G029300 Theobroma cacao HOM05D007696 ORTHO05D009719 6.4e-43 177.9 167 55.7
GSVIVG01008244001 Vitis vinifera HOM05D007696 ORTHO05D009719 8.4e-43 177.6 169 55.0
Potri.015G049800 Populus trichocarpa HOM05D007696 ORTHO05D009719 1.4e-42 176.8 169 55.6
Gohir.D08G105400 Gossypium hirsutum HOM05D007696 ORTHO05D009719 2.7e-41 172.6 167 54.5
Gorai.004G112300 Gossypium raimondii HOM05D007696 ORTHO05D009719 2.7e-41 172.6 167 54.5
FAN08G1182 Fragaria x ananassa HOM05D007696 ORTHO05D009719 4.6e-41 171.8 169 53.3
Atru.chr9.778 Acer truncatum HOM05D007696 ORTHO05D009719 1.7e-40 169.9 167 53.3
FAN13G0134 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.7e-40 169.9 169 53.3
CiPaw.15G127500 Carya illinoinensis HOM05D007696 ORTHO05D009719 2.3e-40 169.5 167 54.5
COL.COLO4_16235 Corchorus olitorius HOM05D007696 ORTHO05D009719 3.0e-40 169.1 167 53.9
Actinidia39813 Actinidia chinensis HOM05D007696 ORTHO05D009719 3.9e-40 168.7 167 54.5
Gohir.A08G094200 Gossypium hirsutum HOM05D007696 ORTHO05D009719 3.9e-40 168.7 169 52.7
RcHm_v2.0_Chr7g0184691 Rosa chinensis HOM05D007696 ORTHO05D009719 6.6e-40 167.9 171 55.0
FvH4_5g12640 Fragaria vesca HOM05D007696 ORTHO05D009719 8.7e-40 167.5 171 53.8
TWI81G0276 Tripterygium wilfordii HOM05D007696 ORTHO05D009719 8.7e-40 167.5 167 55.7
Lj9A429T50 Lonicera japonica HOM05D007696 ORTHO05D009719 3.3e-39 165.6 167 53.3
Oeu055893.1 Olea europaea HOM05D007696 ORTHO05D009719 7.3e-39 164.5 167 53.9
Prupe.5G218000 Prunus persica HOM05D007696 ORTHO05D009719 1.3e-38 163.7 169 51.5
Ciclev10022427m.g Citrus clementina HOM05D007696 ORTHO05D009719 2.8e-38 162.5 167 50.3
Dinv07368 Davidia involucrata HOM05D007696 ORTHO05D009719 8.1e-38 161.0 169 52.7
FAN18G3725 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.8e-37 159.8 171 52.6
Cc04_g07460 Coffea canephora HOM05D007696 ORTHO05D009719 3.1e-37 159.1 167 52.7
FAN04G2461 Fragaria x ananassa HOM05D007696 ORTHO05D009719 5.3e-37 158.3 182 48.4
TAR622G0575 Trochodendron aralioides HOM05D007696 ORTHO05D009719 6.9e-37 157.9 169 49.7
MD14G1222400 Malus domestica HOM05D007696 ORTHO05D009719 4.4e-36 155.2 169 50.9
CANSAT54G0455 Cannabis sativa HOM05D007696 ORTHO05D009719 1.4e-34 150.2 167 45.5
Sc04g0003700 Simmondsia chinensis HOM05D007696 ORTHO05D009719 1.4e-34 150.2 169 50.9
Aqoxy3G03910 Aquilegia oxysepala HOM05D007696 ORTHO05D009719 2.4e-34 149.4 167 50.3
Cfa019805 Carpinus fangiana HOM05D007696 ORTHO05D009719 7.1e-34 147.9 167 48.5
CANSAT54G2838 Cannabis sativa HOM05D007696 ORTHO05D009719 1.2e-33 147.1 167 45.5
Lsat_1_v5_gn_4_115821 Lactuca sativa HOM05D007696 ORTHO05D009719 1.2e-33 147.1 167 49.1
vmacro17668 Vaccinium macrocarpon HOM05D007696 ORTHO05D009719 1.3e-32 143.7 167 49.7
AUR62032195 Chenopodium quinoa HOM05D007696 ORTHO05D009719 1.7e-32 143.3 167 49.1
MBI13_g27794_MAGBIO Magnolia biondii HOM05D007696 ORTHO05D009719 2.3e-32 142.9 167 49.1
Eucgr.K02660 Eucalyptus grandis HOM05D007696 ORTHO05D009719 3.0e-32 142.5 167 46.1
CAN.G438.120 Capsicum annuum HOM05D007696 ORTHO05D009719 3.9e-32 142.1 167 47.3
ECA232G0656 Erigeron canadensis HOM05D007696 ORTHO05D009719 3.9e-32 142.1 168 47.0
Aa31LG8G5380 Aethionema arabicum HOM05D007696 ORTHO05D009719 1.9e-31 139.8 143 57.3
AUR62036960 Chenopodium quinoa HOM05D007696 ORTHO05D009719 2.1e-30 136.3 167 48.5
Lalb_Chr19g0140261 Lupinus albus HOM05D007696 ORTHO05D009719 1.1e-29 134.0 169 42.0
Cpa.g.sc13.41 Carica papaya HOM05D007696 ORTHO05D009719 1.5e-28 130.2 106 63.2
TPR.G30177 Trifolium pratense HOM05D007696 ORTHO05D009719 3.8e-27 125.6 147 45.6
CSS0029722 Camellia sinensis var. sinensis HOM05D007696 ORTHO05D009719 8.4e-27 124.4 110 63.6
AT1G61450 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 1.1e-26 124.0 110 67.3
Glyma.09G227800 Glycine max HOM05D007696 ORTHO05D009719 1.4e-26 123.6 169 42.6
Hund10004 Selenicereus undatus HOM05D007696 ORTHO05D009719 2.4e-26 122.9 169 43.8
PSO063G6876 Papaver somniferum HOM05D007696 ORTHO05D009719 3.5e-25 119.0 167 44.9
VMungo1127G1702 Vigna mungo HOM05D007696 ORTHO05D009719 6.0e-25 118.2 169 40.2
FAN18G2008 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.0e-24 117.5 197 40.6
Nn4g23733 Nelumbo nucifera HOM05D007696 ORTHO05D009719 3.0e-24 115.9 169 44.4
HanXRQChr09g0269891 Helianthus annuus HOM05D007696 ORTHO05D009719 6.7e-24 114.8 183 38.8
Lj3g0018148 Lotus japonicus HOM05D007696 ORTHO05D009719 8.7e-24 114.4 169 41.4
Phvul.011G012300 Phaseolus vulgaris HOM05D007696 ORTHO05D009719 8.7e-24 114.4 169 39.1
Psat7g166400 Pisum sativum HOM05D007696 ORTHO05D009719 8.7e-24 114.4 169 40.2
arahy.Tifrunner.gnm1.ann1.ISQN6X Arachis hypogaea HOM05D007696 ORTHO05D009719 1.9e-23 113.2 169 40.8
EL10Ac5g11256 Beta vulgaris HOM05D007696 ORTHO05D009719 9.6e-23 110.9 167 43.1
DCAR_011551 Daucus carota HOM05D007696 ORTHO05D009719 8.1e-22 107.8 106 56.6
Rhsim08G0136100 Rhododendron simsii HOM05D007696 ORTHO05D009719 1.0e-19 100.9 261 31.4
Hma1.2p1_0340F.1_g129830 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 6.5e-19 98.2 74 68.9
Hma1.2p1_0340F.1_g129843 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 6.5e-19 98.2 74 68.9
Zm00001eb347780 Zea mays HOM05D007696 ORTHO05D009719 3.2e-18 95.9 166 37.3
CDE02G2124 Ceratophyllum demersum HOM05D007696 ORTHO05D009719 9.3e-18 94.4 101 51.5
AL2G14840 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 3.0e-16 89.4 61 77.0
Haze_18634 Corylus avellana HOM05D007696 ORTHO05D009719 6.7e-16 88.2 74 64.9
arahy.Tifrunner.gnm1.ann1.2ZW1BF Arachis hypogaea HOM05D007696 ORTHO05D009719 1.1e-15 87.4 204 32.4
Sabra15G0078100 Salix brachista HOM05D007696 ORTHO05D009719 1.3e-14 84.0 95 45.3
Os05g0275600 Oryza sativa ssp. japonica HOM05D007696 ORTHO05D009719 2.8e-14 82.8 166 36.1
Medtr0085s0020 Medicago truncatula HOM05D007696 ORTHO05D009719 6.9e-13 78.2 90 41.1
Lsat_1_v5_gn_9_67701 Lactuca sativa HOM05D007696 ORTHO05D009719 9.0e-13 77.8 58 69.0


User provided reference genes

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