Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 3.6e-129 464.9 233 100.0
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 3.9e-99 365.2 194 94.8
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 1.6e-97 359.8 194 92.8
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 1.6e-97 359.8 194 92.3
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 1.6e-97 359.8 194 93.3
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 8.3e-94 347.4 189 92.1
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 2.0e-92 342.8 195 89.7
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 2.0e-92 342.8 195 89.7
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 6.0e-92 341.3 189 91.5
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 5.6e-90 334.7 196 87.2
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 2.4e-85 319.3 178 88.8
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 3.2e-85 318.9 196 84.2
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 1.5e-82 310.1 186 83.3
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 2.8e-81 305.8 174 90.2
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 3.8e-78 295.4 158 94.3
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 8.4e-78 294.3 158 93.7
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 1.7e-70 270.0 175 74.9
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 6.4e-70 268.1 176 73.9
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 1.7e-67 260.0 169 73.4
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 5.1e-67 258.5 177 70.6
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 8.7e-67 257.7 194 65.5
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 8.7e-67 257.7 194 65.5
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 1.5e-66 256.9 213 63.4
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 2.5e-66 256.1 194 66.5
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 3.3e-66 255.8 179 70.9
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 5.6e-66 255.0 170 70.0
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 7.3e-66 254.6 176 69.3
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 7.3e-66 254.6 176 71.0
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 9.6e-66 254.2 169 71.6
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 1.3e-65 253.8 197 65.0
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 1.6e-65 253.4 178 69.7
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 2.8e-65 252.7 199 63.3
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 4.8e-65 251.9 170 71.8
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 8.1e-65 251.1 183 66.1
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 1.1e-64 250.8 170 70.6
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 1.1e-64 250.8 179 69.3
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 1.8e-64 250.0 194 64.4
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 4.0e-64 248.8 169 69.8
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 6.9e-64 248.1 213 62.4
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 1.5e-63 246.9 190 63.7
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 2.0e-63 246.5 194 62.4
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 2.6e-63 246.1 190 63.2
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 2.6e-63 246.1 192 64.1
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 4.5e-63 245.4 176 68.8
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 5.8e-63 245.0 169 68.0
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 7.6e-63 244.6 173 68.2
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 1.3e-62 243.8 165 69.7
FAN24G0248 Fragaria x ananassa HOM05D007029 ORTHO05D008258 2.2e-62 243.0 190 62.6
PGR044G0703 Punica granatum HOM05D007029 ORTHO05D008258 2.9e-62 242.7 179 64.8
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 2.9e-62 242.7 169 67.5
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 3.8e-62 242.3 192 64.6
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 3.8e-62 242.3 179 67.0
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 6.4e-62 241.5 196 63.8
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 8.4e-62 241.1 176 64.8
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 1.9e-61 240.0 189 61.4
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 9.3e-61 237.7 180 66.7
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 1.6e-60 236.9 198 62.1
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 2.1e-60 236.5 186 61.8
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 2.1e-60 236.5 165 70.3
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 2.7e-60 236.1 173 63.6
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 3.5e-60 235.7 169 66.3
Os04g0606900 Oryza sativa ssp. japonica HOM05D007029 ORTHO05D008258 1.8e-59 233.4 176 62.5
Zm00001eb071440 Zea mays HOM05D007029 ORTHO05D008258 1.1e-58 230.7 184 62.0
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 1.9e-58 229.9 160 68.8
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 5.6e-58 228.4 181 64.1
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 7.4e-58 228.0 163 66.9
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 9.6e-58 227.6 193 57.0
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 2.4e-56 223.0 158 66.5
CANSAT25G3139 Cannabis sativa HOM05D007029 ORTHO05D008258 3.1e-56 222.6 158 67.1
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 5.3e-56 221.9 195 55.4
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 3.4e-55 219.2 171 61.4
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 4.5e-55 218.8 179 63.7
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 1.3e-54 217.2 162 65.4
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 8.4e-54 214.5 181 60.2
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 4.2e-53 212.2 138 73.2
ClCG05G017440 Citrullus lanatus HOM05D007029 ORTHO05D008258 7.1e-53 211.5 159 66.0
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 2.7e-52 209.5 165 60.6
TWI63G1096 Tripterygium wilfordii HOM05D007029 ORTHO05D008258 2.7e-52 209.5 162 63.0
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 8.7e-51 204.5 181 56.4
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 3.3e-50 202.6 255 46.7
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 1.3e-49 200.7 194 58.8
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 1.0e-46 191.0 167 58.7
CBR_g21129 Chara braunii HOM05D007029 ORTHO05D008258 1.7e-46 190.3 230 45.7
AagrBONN_evm.TU.Sc2ySwM_368.1595 Anthoceros agrestis HOM05D007029 ORTHO05D008258 3.8e-46 189.1 175 52.6
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 6.5e-46 188.3 168 58.9
Pp3c10_14520 Physcomitrium patens HOM05D007029 ORTHO05D008258 4.2e-45 185.7 161 52.8
C09p66660 Brassica napus HOM05D007029 ORTHO05D008258 2.7e-44 183.0 97 93.8
SMO145G0271 Selaginella moellendorffii HOM05D007029 ORTHO05D008258 1.9e-42 176.8 158 52.5
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 2.5e-42 176.4 193 50.3
COL.COLO4_18612 Corchorus olitorius HOM05D007029 ORTHO05D008258 1.1e-40 171.0 119 68.9
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 1.4e-40 170.6 181 53.0
MCO07G593 Micromonas commoda HOM05D007029 ORTHO05D008258 1.3e-38 164.1 161 50.9
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 1.7e-38 163.7 125 64.0
Dinv09200 Davidia involucrata HOM05D007029 ORTHO05D008258 8.5e-38 161.4 145 58.6
Thhalv10000503m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 8.5e-38 161.4 133 69.9
Actinidia22252 Actinidia chinensis HOM05D007029 ORTHO05D008258 1.4e-37 160.6 122 61.5
Lsat_1_v5_gn_2_109441 Lactuca sativa HOM05D007029 ORTHO05D008258 3.2e-37 159.5 141 55.3
AUR62038752 Chenopodium quinoa HOM05D007029 ORTHO05D008258 4.6e-36 155.6 130 56.2
Ah.10g033770 Amaranthus hybridus HOM05D007029 ORTHO05D008258 1.3e-35 154.1 129 58.9
SEGI_22347 Sequoiadendron giganteum HOM05D007029 ORTHO05D008258 1.3e-35 154.1 132 54.5
Cre16.g680100 Chlamydomonas reinhardtii HOM05D007029 ORTHO05D008258 8.7e-35 151.4 162 51.2
AUR62020630 Chenopodium quinoa HOM05D007029 ORTHO05D008258 3.3e-34 149.4 105 63.8
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 3.3e-34 149.4 97 71.1
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 9.7e-34 147.9 109 65.1
Gohir.D06G109100 Gossypium hirsutum HOM05D007029 ORTHO05D008258 1.7e-33 147.1 107 65.4
VMungo0647G0111 Vigna mungo HOM05D007029 ORTHO05D008258 4.8e-33 145.6 115 61.7
Medtr1g010000 Medicago truncatula HOM05D007029 ORTHO05D008258 3.1e-32 142.9 118 60.2
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 4.5e-31 139.0 97 67.0
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 4.2e-29 132.5 98 65.3
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 5.7e-26 122.1 75 81.3
PRCOL_00001289 Prasinoderma coloniale HOM05D007029 ORTHO05D008258 5.9e-23 112.1 140 42.9
Haze_21697 Corylus avellana HOM05D000022 ORTHO05D010831 3.2e-21 106.3 160 40.6
COL.COLO4_02059 Corchorus olitorius HOM05D007029 ORTHO05D008258 6.3e-17 92.0 155 31.6
Hma1.2p1_0443F.1_g154040 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 1.4e-16 90.9 88 51.1
ECA238G0229 Erigeron canadensis HOM05D007029 ORTHO05D008258 5.3e-16 89.0 97 42.3
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 3.8e-14 82.8 49 81.6
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 4.0e-11 72.8 49 69.4
AT5G10605 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 7.0e-08 62.0 36 86.1


User provided reference genes

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