Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 5.5e-162 574.3 308 100.0
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 3.8e-147 525.0 308 90.9
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 4.3e-138 495.0 309 85.8
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 4.0e-136 488.4 309 84.8
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 5.8e-135 484.6 308 84.1
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 1.2e-132 476.9 311 83.3
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 3.3e-130 468.8 309 82.8
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 9.5e-130 467.2 309 82.5
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.6e-129 466.5 309 83.2
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 1.8e-128 463.0 309 82.2
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 1.8e-128 463.0 309 82.2
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.8e-128 463.0 309 81.9
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 3.5e-124 448.7 312 79.8
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 1.6e-84 317.0 313 60.4
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 9.1e-72 274.6 310 53.5
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 1.5e-71 273.9 309 52.1
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 3.8e-70 269.2 314 51.9
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 6.5e-70 268.5 309 51.1
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 1.4e-69 267.3 308 51.3
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.1e-68 263.5 309 52.1
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 2.7e-68 263.1 308 51.6
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 4.7e-68 262.3 309 51.8
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 6.7e-67 258.5 309 50.5
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 8.8e-67 258.1 338 51.5
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 1.1e-66 257.7 312 50.6
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 7.4e-66 255.0 303 50.2
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 1.3e-65 254.2 308 51.9
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.8e-65 253.1 310 49.7
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.4e-64 250.0 310 52.9
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 4.1e-64 249.2 305 51.1
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 4.1e-64 249.2 303 51.2
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 7.0e-64 248.4 310 51.3
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 1.5e-63 247.3 311 48.9
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 3.5e-63 246.1 309 48.5
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 4.5e-63 245.7 308 52.9
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 5.9e-63 245.4 308 52.9
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 5.9e-63 245.4 308 50.6
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.7e-63 245.0 308 53.2
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 7.7e-63 245.0 300 52.0
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.0e-62 244.6 308 52.9
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.3e-62 244.2 312 49.0
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 2.2e-62 243.4 306 49.3
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 3.8e-62 242.7 310 47.7
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 8.5e-62 241.5 310 49.7
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 8.5e-62 241.5 305 50.5
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.5e-61 240.0 309 53.4
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 2.5e-61 240.0 309 49.5
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 4.7e-60 235.7 309 46.6
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 1.4e-59 234.2 305 48.5
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.8e-59 233.8 311 46.0
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 2.3e-59 233.4 306 47.7
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 2.3e-59 233.4 306 47.4
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 6.7e-59 231.9 309 46.3
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 6.7e-59 231.9 315 46.0
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.5e-58 230.7 313 45.4
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 3.3e-58 229.6 314 46.5
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 4.4e-58 229.2 306 46.1
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 5.7e-58 228.8 310 48.1
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 1.3e-57 227.6 309 46.0
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 1.7e-57 227.3 284 48.2
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 1.7e-57 227.3 304 48.0
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 2.2e-57 226.9 310 47.1
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 6.3e-57 225.3 311 43.1
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 1.4e-56 224.2 318 46.9
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 5.3e-56 222.2 306 49.0
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 9.1e-56 221.5 311 44.1
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 1.2e-55 221.1 316 45.9
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 2.0e-55 220.3 321 46.7
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 3.5e-55 219.5 311 46.3
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 5.9e-55 218.8 254 51.2
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.7e-54 217.2 308 46.4
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 2.2e-54 216.9 308 46.4
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 3.8e-54 216.1 309 45.6
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 6.5e-54 215.3 324 43.8
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 6.5e-54 215.3 286 44.1
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 8.5e-54 214.9 315 44.1
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 1.9e-53 213.8 320 45.6
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 2.7e-52 209.9 310 41.3
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 6.1e-52 208.8 311 43.1
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 6.1e-52 208.8 288 46.5
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 6.1e-52 208.8 309 43.0
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 8.0e-52 208.4 311 42.8
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 8.0e-52 208.4 316 45.3
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.0e-51 208.0 310 40.6
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.4e-51 207.6 314 42.0
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.8e-51 207.2 310 41.0
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.8e-51 207.2 310 41.0
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 2.3e-51 206.8 313 43.5
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 5.2e-51 205.7 320 43.1
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.6e-50 203.4 311 41.5
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 3.3e-50 203.0 314 43.3
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 4.4e-50 202.6 286 44.1
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 4.4e-50 202.6 270 47.0
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 7.5e-50 201.8 298 44.3
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 9.7e-50 201.4 316 43.7
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 9.7e-50 201.4 202 59.4
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.3e-49 201.1 327 41.3
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.3e-49 201.1 327 41.3
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.7e-49 200.7 320 43.8
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 5.3e-48 195.7 309 41.7
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 7.0e-48 195.3 297 40.7
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 1.2e-47 194.5 310 42.9
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.5e-47 192.6 284 42.3
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 5.9e-47 192.2 316 41.8
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.0e-46 191.4 318 41.5
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 3.8e-46 189.5 246 46.7
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 6.5e-46 188.7 286 43.7
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 1.6e-44 184.1 309 39.8
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 2.7e-44 183.3 268 46.3
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 2.7e-44 183.3 269 43.9
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 4.7e-44 182.6 277 43.0
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.5e-42 177.6 306 40.2
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 4.4e-42 176.0 285 42.1
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 1.3e-41 174.5 306 40.2
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 8.3e-41 171.8 285 40.7
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.1e-40 171.4 285 40.7
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 4.1e-40 169.5 320 40.3
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 4.1e-40 169.5 306 38.6
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.0e-38 164.9 272 40.4
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 6.8e-35 152.1 227 44.5
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 1.7e-30 137.5 157 52.2
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 3.5e-23 113.2 176 42.6
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.3e-22 111.3 277 34.7
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 3.0e-22 110.2 133 51.1
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 5.1e-14 82.8 231 31.2
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 2.5e-13 80.5 147 38.1
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 4.0e-11 73.2 98 45.9
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.0e-10 70.9 162 35.8
C03p36620 Brassica napus HOM05D006030 ORTHO05D007475 1.7e-09 67.8 55 69.1
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 4.6e-07 59.7 122 39.3


User provided reference genes

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