Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 9.0e-243 843.2 435 100.0
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 5.3e-203 711.1 438 85.4
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 8.5e-201 703.7 442 84.4
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 1.8e-195 686.0 441 83.2
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 2.4e-195 685.6 439 83.4
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 4.5e-194 681.4 438 83.6
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 8.6e-193 677.2 436 82.1
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 3.3e-192 675.2 437 81.9
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 1.2e-191 673.3 437 81.7
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 2.8e-191 672.2 441 79.4
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 5.2e-190 667.9 439 81.3
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 3.0e-169 599.0 439 72.2
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 1.3e-127 460.7 478 53.3
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 6.9e-126 454.9 452 56.2
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.4e-123 447.2 470 55.3
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.5e-123 446.4 468 54.7
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 4.2e-123 445.7 468 54.7
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 4.6e-122 442.2 460 55.4
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 6.1e-122 441.8 462 53.7
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 1.0e-121 441.0 487 53.4
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 1.3e-121 440.7 506 49.8
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 2.3e-121 439.9 509 50.5
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 5.1e-121 438.7 469 54.8
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 8.7e-121 438.0 461 54.2
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 1.5e-120 437.2 463 54.6
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 2.2e-119 433.3 438 56.2
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 2.8e-119 433.0 473 53.7
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.1e-118 429.1 455 54.3
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 5.3e-118 428.7 462 52.2
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 6.9e-118 428.3 470 53.6
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 9.0e-118 427.9 461 54.7
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.2e-116 423.3 455 54.1
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 2.9e-116 422.9 507 48.3
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 2.9e-116 422.9 508 49.8
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 1.4e-115 420.6 442 55.0
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.5e-115 419.9 455 53.0
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 3.2e-115 419.5 455 54.1
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 3.2e-115 419.5 505 48.7
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 5.5e-115 418.7 466 51.3
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.2e-114 417.5 460 52.6
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 2.7e-114 416.4 511 48.5
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 3.6e-114 416.0 509 48.1
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 3.0e-113 412.9 503 49.9
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 3.0e-113 412.9 459 51.2
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 3.0e-113 412.9 463 51.6
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 3.9e-113 412.5 504 47.8
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 5.1e-113 412.1 503 50.3
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 2.0e-112 410.2 461 50.3
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 2.5e-112 409.8 489 50.3
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 3.3e-112 409.5 459 51.0
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 4.3e-112 409.1 456 51.3
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 1.8e-110 403.7 462 49.8
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 5.3e-110 402.1 504 48.8
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 9.1e-110 401.4 458 51.1
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 1.7e-108 397.1 467 50.7
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 1.4e-107 394.0 445 51.2
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 7.2e-107 391.7 466 50.4
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 9.4e-107 391.3 488 48.2
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 2.1e-106 390.2 445 50.8
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 3.6e-106 389.4 451 49.7
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 6.1e-106 388.7 467 47.3
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.1e-102 375.9 491 46.8
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 5.3e-102 375.6 455 50.8
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 2.0e-101 373.6 443 48.3
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 3.5e-101 372.9 450 50.9
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 2.5e-99 366.7 488 45.7
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 1.2e-98 364.4 463 47.3
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 1.2e-98 364.4 476 46.2
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 1.6e-98 364.0 408 50.5
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 2.1e-98 363.6 460 46.1
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 8.0e-98 361.7 487 46.4
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.1e-96 357.8 461 46.9
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 1.5e-96 357.5 465 46.9
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 2.6e-96 356.7 459 46.8
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 4.8e-95 352.4 463 46.0
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 8.2e-95 351.7 467 46.0
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 2.0e-93 347.1 415 49.4
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 2.6e-93 346.7 383 52.5
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.3e-92 344.4 466 45.9
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 1.1e-91 341.3 428 46.3
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 1.2e-90 337.8 470 45.1
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 3.4e-88 329.7 530 42.8
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 7.5e-88 328.6 430 48.6
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 9.8e-88 328.2 433 46.7
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 7.5e-80 302.0 391 46.5
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 1.0e-76 291.6 440 42.7
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 1.5e-75 287.7 458 39.1
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 2.9e-71 273.5 438 40.0
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 1.1e-70 271.6 401 43.4
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 2.4e-70 270.4 432 40.0
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 3.9e-68 263.1 378 45.5
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 4.0e-65 253.1 445 39.8
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.2e-64 251.5 340 46.8
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 5.8e-64 249.2 335 46.6
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 4.9e-63 246.1 200 62.5
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 2.1e-58 230.7 310 45.2
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 1.7e-55 221.1 544 30.9
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 2.4e-54 217.2 218 55.5
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 4.1e-54 216.5 505 32.7
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 1.2e-53 214.9 174 60.3
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.3e-52 211.5 283 46.3
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 3.3e-51 206.8 433 33.9
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 1.6e-50 204.5 243 49.0
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 1.3e-47 194.9 198 53.5
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 7.1e-46 189.1 210 53.3
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 1.2e-45 188.3 369 32.2
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 7.3e-43 179.1 123 70.7
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 4.9e-39 166.4 267 41.6
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.1e-37 161.0 123 66.7
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 1.3e-34 151.8 170 47.1
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 6.2e-26 122.9 142 52.8
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 6.0e-21 106.3 69 73.9
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 6.0e-21 106.3 69 73.9
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 6.2e-18 96.3 115 47.0
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 8.7e-12 75.9 170 31.8
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.5e-11 75.1 48 75.0
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 2.1e-10 71.2 89 48.3
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 6.9e-09 66.2 52 63.5
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 1.2e-08 65.5 171 31.6
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 7.2e-06 56.2 77 42.9


User provided reference genes

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