Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 2.8e-64 248.4 123 100.0
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 1.8e-55 219.2 121 89.3
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 4.0e-55 218.0 121 88.4
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 2.2e-53 212.2 122 87.7
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 2.2e-53 212.2 122 87.7
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 2.4e-52 208.8 122 86.1
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 4.2e-52 208.0 123 85.4
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 2.7e-51 205.3 123 83.7
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 1.0e-50 203.4 121 84.3
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 1.0e-50 203.4 121 84.3
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 1.7e-50 202.6 123 82.9
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 1.7e-50 202.6 123 82.9
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 1.7e-50 202.6 123 82.9
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 6.6e-50 200.7 123 82.9
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 8.7e-50 200.3 124 82.3
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 1.4e-44 183.0 125 76.8
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 1.2e-43 179.9 131 71.0
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 7.9e-43 177.2 117 76.9
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 8.1e-40 167.2 119 68.9
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 5.3e-39 164.5 82 93.9
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 8.2e-32 140.6 114 58.8
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 8.2e-32 140.6 79 73.4
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.1e-31 140.2 79 74.7
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 1.4e-31 139.8 79 73.4
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 1.8e-31 139.4 111 56.8
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 1.8e-31 139.4 114 57.9
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 6.9e-31 137.5 119 54.6
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 9.0e-31 137.1 79 70.9
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 1.5e-30 136.3 115 55.7
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 2.0e-30 136.0 79 72.2
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 2.6e-30 135.6 79 68.4
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 2.6e-30 135.6 114 54.4
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 3.4e-30 135.2 111 54.1
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 4.5e-30 134.8 77 71.4
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 5.8e-30 134.4 77 71.4
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 5.8e-30 134.4 119 54.6
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 7.6e-30 134.0 77 71.4
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 1.0e-29 133.7 109 56.9
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.0e-29 133.7 75 73.3
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 1.0e-29 133.7 113 52.2
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 1.3e-29 133.3 81 69.1
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 1.3e-29 133.3 81 69.1
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 1.3e-29 133.3 76 71.1
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 1.3e-29 133.3 105 56.2
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 1.3e-29 133.3 117 50.4
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 2.2e-29 132.5 77 70.1
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 2.2e-29 132.5 77 67.5
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 2.9e-29 132.1 84 63.1
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 3.8e-29 131.7 79 67.1
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 4.9e-29 131.3 77 68.8
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 6.5e-29 131.0 123 52.0
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 6.5e-29 131.0 110 54.5
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 8.4e-29 130.6 79 65.8
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 8.4e-29 130.6 113 54.0
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 8.4e-29 130.6 76 69.7
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 8.4e-29 130.6 104 56.7
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 1.1e-28 130.2 75 69.3
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 1.1e-28 130.2 78 67.9
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.1e-28 130.2 114 55.3
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 1.4e-28 129.8 78 69.2
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 2.5e-28 129.0 112 52.7
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 2.5e-28 129.0 73 74.0
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 2.5e-28 129.0 118 50.0
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 2.5e-28 129.0 77 66.2
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 2.5e-28 129.0 77 67.5
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 2.5e-28 129.0 121 52.9
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 3.2e-28 128.6 114 54.4
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 3.2e-28 128.6 114 54.4
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 7.1e-28 127.5 115 53.0
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 7.1e-28 127.5 106 55.7
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 9.3e-28 127.1 108 55.6
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 9.3e-28 127.1 77 66.2
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 1.2e-27 126.7 79 63.3
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 1.6e-27 126.3 110 51.8
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 1.6e-27 126.3 99 60.6
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 3.5e-27 125.2 75 68.0
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 3.5e-27 125.2 73 71.2
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 4.6e-27 124.8 74 68.9
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 4.6e-27 124.8 107 54.2
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 6.0e-27 124.4 74 70.3
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 7.9e-27 124.0 107 54.2
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 1.0e-26 123.6 110 57.3
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 1.0e-26 123.6 114 50.9
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 1.0e-26 123.6 74 67.6
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.3e-26 123.2 73 67.1
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 3.0e-26 122.1 74 67.6
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 3.9e-26 121.7 79 64.6
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 6.7e-26 120.9 120 47.5
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 6.7e-26 120.9 75 66.7
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 1.1e-25 120.2 110 49.1
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 1.1e-25 120.2 75 72.0
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 1.9e-25 119.4 109 55.0
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 5.7e-25 117.9 71 69.0
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 9.7e-25 117.1 73 64.4
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 1.3e-24 116.7 75 64.0
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 1.3e-24 116.7 75 64.0
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 1.3e-24 116.7 75 64.0
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 1.3e-24 116.7 75 64.0
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 1.3e-24 116.7 111 51.4
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 3.7e-24 115.2 76 63.2
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 4.8e-24 114.8 112 50.9
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 4.8e-24 114.8 75 61.3
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 4.8e-24 114.8 75 61.3
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 4.8e-24 114.8 75 61.3
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 4.8e-24 114.8 74 60.8
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 6.3e-24 114.4 100 52.0
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 6.3e-24 114.4 75 62.7
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 4.1e-23 111.7 75 60.0
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 4.1e-23 111.7 75 60.0
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 6.5e-21 104.4 74 56.8
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 5.5e-20 101.3 74 54.1
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 9.3e-20 100.5 74 51.4
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 1.6e-19 99.8 74 54.1
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 2.1e-19 99.4 59 67.8
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 6.1e-19 97.8 54 77.8
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 6.7e-18 94.4 102 46.1
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 6.7e-18 94.4 102 46.1
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 9.7e-17 90.5 60 61.7
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 3.7e-16 88.6 74 48.6
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 8.5e-13 77.4 113 38.9
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 1.1e-09 67.0 78 41.0
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 1.1e-09 67.0 78 41.0
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 2.6e-09 65.9 78 41.0
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 3.3e-09 65.5 117 34.2
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 5.7e-09 64.7 78 39.7
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 5.7e-09 64.7 68 44.1
arahy.Tifrunner.gnm1.ann1.UI26XR Arachis hypogaea HOM05D001848 ORTHO05D001295 1.7e-08 63.2 77 40.3
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 2.8e-08 62.4 66 42.4
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 6.3e-08 61.2 70 42.9
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 1.4e-07 60.1 69 37.7
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 1.4e-07 60.1 70 40.0
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 3.1e-07 58.9 68 36.8
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 3.1e-07 58.9 65 38.5
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 4.1e-07 58.5 68 42.6
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 5.3e-07 58.2 65 38.5
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 9.1e-07 57.4 65 38.5
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 1.2e-06 57.0 63 41.3
Prupe.4G228100 Prunus persica HOM05D001848 ORTHO05D001295 1.2e-06 57.0 68 39.7
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 1.5e-06 56.6 66 43.9
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 2.0e-06 56.2 64 42.2
FAN21G1579 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.0e-06 56.2 63 41.3
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 2.6e-06 55.8 65 41.5
Hma1.2p1_0412F.1_g147100 Hydrangea macrophylla HOM05D001848 ORTHO05D001295 2.6e-06 55.8 65 38.5
arahy.Tifrunner.gnm1.ann1.04HYJ8 Arachis hypogaea HOM05D001848 ORTHO05D001295 3.4e-06 55.5 60 41.7
arahy.Tifrunner.gnm1.ann1.FN75LP Arachis hypogaea HOM05D001848 ORTHO05D001295 3.4e-06 55.5 64 43.8
CAN.G862.20 Capsicum annuum HOM05D001848 ORTHO05D001295 3.4e-06 55.5 58 44.8
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 4.5e-06 55.1 58 44.8
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 5.9e-06 54.7 64 40.6
Solyc03g121900.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 5.9e-06 54.7 64 40.6
CiPaw.11G196700 Carya illinoinensis HOM05D001848 ORTHO05D001295 7.7e-06 54.3 78 37.2
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 7.7e-06 54.3 63 44.4
Sopen03g040720 Solanum pennellii HOM05D001848 ORTHO05D001295 7.7e-06 54.3 64 40.6
PGSC0003DMG400002487 Solanum tuberosum HOM05D001848 ORTHO05D001295 7.7e-06 54.3 64 40.6


User provided reference genes

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