Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 0.0e+00 1166.8 611 100.0
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 4.3e-291 1004.2 611 87.7
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 3.0e-260 901.7 616 81.3
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 1.5e-259 899.4 614 80.8
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 1.4e-257 892.9 604 82.6
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 2.2e-250 869.0 616 79.7
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 7.2e-246 854.0 614 78.8
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 2.6e-243 845.5 615 78.4
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 3.1e-241 838.6 615 77.9
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 3.1e-241 838.6 615 77.9
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 2.9e-231 805.4 615 75.6
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 2.7e-229 798.9 615 75.6
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 3.1e-172 609.4 645 57.2
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 6.9e-164 581.6 643 56.5
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 1.8e-140 503.8 622 51.1
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.5e-139 500.7 621 51.0
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 7.7e-139 498.4 406 66.7
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.0e-138 498.0 622 51.1
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.9e-137 493.8 355 73.0
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 4.2e-137 492.7 411 64.0
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 2.1e-136 490.3 627 50.1
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 3.6e-136 489.6 411 63.7
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 4.6e-136 489.2 426 62.4
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 6.1e-136 488.8 404 66.8
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 6.1e-136 488.8 430 63.3
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 1.8e-135 487.3 348 72.4
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 3.0e-135 486.5 437 61.1
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 3.9e-135 486.1 367 68.9
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 3.9e-135 486.1 623 51.0
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 6.7e-135 485.3 657 49.5
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.5e-134 484.2 423 61.5
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 2.0e-134 483.8 433 61.0
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.5e-134 483.4 422 62.3
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 4.3e-134 482.6 344 72.4
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 5.7e-134 482.3 406 63.5
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 2.2e-133 480.3 442 62.4
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 2.8e-133 479.9 453 60.7
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.8e-133 479.2 339 72.3
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 4.8e-133 479.2 443 60.7
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 8.2e-133 478.4 422 62.6
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 8.2e-133 478.4 348 71.0
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 8.2e-133 478.4 437 61.3
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 1.4e-132 477.6 433 63.0
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 1.8e-132 477.2 627 49.4
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 1.8e-132 477.2 399 65.4
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 5.3e-132 475.7 642 48.9
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 6.9e-132 475.3 433 61.2
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 9.1e-132 474.9 624 49.5
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 9.1e-132 474.9 398 65.1
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 2.0e-131 473.8 509 56.6
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 3.4e-131 473.0 604 51.3
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 3.4e-131 473.0 400 64.8
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 3.4e-131 473.0 636 48.0
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 4.5e-131 472.6 367 66.8
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 7.7e-131 471.9 620 49.2
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 1.0e-130 471.5 649 47.6
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 5.0e-130 469.2 401 63.3
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 6.5e-130 468.8 350 70.6
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 6.5e-130 468.8 636 48.3
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.1e-129 468.0 401 64.1
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.1e-129 468.0 348 70.4
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 1.4e-129 467.6 342 68.7
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.4e-129 467.6 642 48.3
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 9.4e-129 464.9 424 61.3
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 1.2e-128 464.5 627 47.8
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 2.1e-128 463.8 412 62.6
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 4.7e-128 462.6 601 49.4
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.0e-127 461.5 536 53.2
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 1.8e-127 460.7 411 62.0
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 3.0e-127 459.9 397 64.0
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 5.1e-127 459.1 616 49.4
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 8.8e-127 458.4 394 62.2
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 2.2e-125 453.8 431 58.5
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 3.7e-125 453.0 619 48.0
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 1.1e-124 451.4 467 59.7
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 2.4e-124 450.3 310 73.9
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 1.5e-123 447.6 300 75.0
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 1.0e-122 444.9 339 68.4
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 8.5e-122 441.8 340 64.7
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.4e-119 434.5 344 66.6
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 2.0e-118 430.6 584 49.7
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 1.7e-117 427.6 398 60.1
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 2.4e-116 423.7 418 56.7
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 5.3e-116 422.5 391 59.3
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 1.0e-114 418.3 282 76.6
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 1.3e-114 417.9 349 61.6
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.5e-113 414.5 398 58.0
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 8.0e-112 408.7 311 70.1
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 2.3e-111 407.1 327 64.5
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 2.8e-109 400.2 421 55.3
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 7.7e-107 392.1 279 72.8
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 7.7e-107 392.1 279 72.8
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 1.3e-106 391.3 279 72.8
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 2.1e-104 384.0 336 60.4
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 2.4e-100 370.5 339 59.0
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 5.4e-100 369.4 259 71.4
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 1.1e-76 292.0 319 50.5
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 6.6e-74 282.7 286 54.2
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 9.5e-73 278.9 170 78.8
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 3.6e-72 276.9 474 39.7
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 1.4e-63 248.4 212 63.2
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 6.8e-63 246.1 269 49.8
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 9.0e-55 219.2 178 64.6
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 9.3e-52 209.1 197 57.4
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 2.5e-49 201.1 286 43.4
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 1.4e-47 195.3 297 41.8
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 1.2e-46 192.2 280 43.2
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 4.5e-46 190.3 152 67.1
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 4.9e-45 186.8 299 38.8
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 6.7e-42 176.4 147 63.9
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 1.6e-32 145.2 154 50.6
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 6.9e-31 139.8 283 37.5
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 2.2e-21 108.2 73 74.0
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 2.2e-21 108.2 73 74.0
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 3.8e-21 107.5 73 72.6
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 1.1e-20 105.9 83 61.4
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 4.6e-19 100.5 75 74.7
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 4.6e-19 100.5 70 72.9
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 2.3e-18 98.2 70 71.4
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 1.1e-17 95.9 71 66.2
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 7.4e-17 93.2 77 64.9
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 2.8e-16 91.3 56 78.6
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 2.8e-16 91.3 56 78.6
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 4.8e-16 90.5 155 44.5
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 3.4e-14 84.3 64 68.8
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 4.5e-14 84.0 230 31.3
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 3.3e-09 67.8 54 64.8
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 3.3e-09 67.8 54 64.8
BcaC01g01198 Brassica carinata HOM05D041247 ORTHO05D016715 8.2e-08 63.2 71 52.1
BcaB01g00402 Brassica carinata HOM05D041247 ORTHO05D016715 1.1e-07 62.8 71 52.1
BcaNung00771 Brassica carinata HOM05D013368 ORTHO05D031982 2.6e-06 58.2 46 60.9
BolC7t43482H Brassica oleracea HOM05D013368 ORTHO05D031982 2.6e-06 58.2 46 60.9
C03p74890 Brassica napus HOM05D013368 ORTHO05D031982 3.5e-06 57.8 46 58.7
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 7.7e-06 56.6 174 30.5


User provided reference genes

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