Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 1.7e-216 755.7 394 100.0
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.1e-207 726.5 394 95.9
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 2.5e-207 725.3 394 95.7
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 3.6e-206 721.5 394 95.4
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 2.0e-204 715.7 396 95.2
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.1e-202 709.9 394 94.4
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 5.9e-201 704.1 399 93.2
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.0e-200 703.4 394 93.1
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.7e-200 702.6 394 93.1
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.7e-200 702.6 394 93.1
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 2.6e-196 688.7 394 90.9
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 9.8e-196 686.8 378 95.0
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 8.6e-192 673.7 394 86.0
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 3.6e-190 668.3 394 87.1
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 6.6e-176 620.9 403 81.4
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 5.8e-164 581.3 394 78.2
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 4.6e-161 571.6 393 74.6
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 8.6e-160 567.4 392 73.5
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.9e-159 566.2 393 74.6
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 2.1e-158 562.8 394 72.6
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 2.1e-158 562.8 392 74.2
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 3.6e-158 562.0 394 73.1
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 4.7e-158 561.6 392 74.0
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 6.9e-157 557.8 394 72.8
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 9.0e-157 557.4 394 73.1
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 9.0e-157 557.4 392 72.7
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 1.5e-156 556.6 392 73.0
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.6e-156 555.8 392 71.7
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 2.6e-156 555.8 392 71.9
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 9.9e-156 553.9 392 73.2
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 4.9e-155 551.6 392 71.9
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 6.4e-155 551.2 395 73.7
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 1.4e-154 550.1 395 73.2
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 1.9e-154 549.7 392 71.9
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.9e-154 549.7 393 73.0
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.4e-154 549.3 394 72.6
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 5.4e-154 548.1 395 73.4
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 2.7e-153 545.8 393 72.3
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 3.5e-153 545.4 381 78.2
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 3.5e-153 545.4 409 70.2
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 4.6e-153 545.0 393 73.3
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.0e-153 544.7 395 72.9
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.0e-153 544.7 395 72.9
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 6.0e-153 544.7 395 72.4
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.3e-152 543.5 395 72.7
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.3e-152 543.5 395 72.7
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.7e-152 543.1 394 71.3
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 1.7e-152 543.1 396 72.0
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 2.3e-152 542.7 394 72.1
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.9e-152 542.0 395 72.4
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.1e-151 540.4 392 72.4
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 4.3e-151 538.5 394 71.6
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 5.6e-151 538.1 393 70.2
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 7.3e-151 537.7 394 70.6
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 7.3e-151 537.7 394 69.5
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 7.3e-151 537.7 395 71.1
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 9.6e-151 537.3 395 71.6
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 2.8e-150 535.8 395 72.4
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 2.8e-150 535.8 394 69.3
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 3.6e-150 535.4 394 71.3
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.1e-149 533.9 394 70.8
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.1e-149 533.9 394 70.1
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 2.6e-148 529.3 376 72.1
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 7.6e-148 527.7 392 69.4
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 9.9e-148 527.3 394 68.5
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 7.1e-146 521.2 396 68.2
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 2.1e-145 519.6 392 66.8
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.8e-144 516.5 396 68.7
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 3.9e-144 515.4 417 66.2
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.1e-143 513.8 402 69.2
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.9e-143 513.1 394 68.8
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 9.6e-143 510.8 438 63.2
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 4.8e-142 508.4 371 72.5
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 1.5e-140 503.4 371 72.5
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 2.0e-140 503.1 397 68.3
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 2.6e-140 502.7 397 68.0
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 9.9e-140 500.7 393 67.4
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 3.8e-139 498.8 394 67.3
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 4.9e-139 498.4 393 67.9
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 6.4e-139 498.0 356 71.1
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 1.9e-138 496.5 393 67.2
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 7.1e-138 494.6 394 66.8
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 4.6e-137 491.9 394 66.0
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.0e-136 490.7 393 65.4
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 6.2e-134 481.5 413 63.0
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.8e-133 479.9 394 64.7
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 5.8e-132 474.9 394 64.2
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 1.7e-131 473.4 392 65.1
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 8.4e-131 471.1 396 64.1
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 4.2e-130 468.8 398 63.1
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 9.3e-130 467.6 394 64.5
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 1.9e-127 459.9 395 62.0
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 9.7e-127 457.6 426 59.2
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 6.3e-126 454.9 401 62.1
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 3.4e-124 449.1 398 62.1
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.1e-117 427.6 246 90.2
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.2e-116 424.1 394 61.2
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 3.9e-112 409.1 392 55.4
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 6.7e-112 408.3 372 59.1
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 5.7e-111 405.2 394 56.3
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 4.7e-105 385.6 401 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 2.6e-103 379.8 400 52.8
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 2.0e-100 370.2 393 54.2
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 8.5e-99 364.8 346 59.5
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 5.0e-91 339.0 313 58.1
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 1.9e-90 337.0 286 65.0
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 8.9e-80 301.6 328 53.7
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.0e-72 278.1 378 46.0
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 2.3e-72 276.9 153 94.8
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 7.5e-71 271.9 303 53.5
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 8.3e-70 268.5 389 46.8
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 2.2e-62 243.8 165 78.2
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 1.2e-60 238.0 295 49.2
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.3e-59 234.6 545 33.4
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 5.0e-59 232.6 183 63.4
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 3.3e-58 229.9 170 66.5
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 4.3e-58 229.6 183 63.4
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 9.2e-53 211.8 417 32.4
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 3.5e-52 209.9 125 89.6
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 1.9e-50 204.1 137 79.6
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 3.6e-49 199.9 420 36.2
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.4e-48 198.0 122 80.3
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 6.8e-48 195.7 397 35.3
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 5.8e-47 192.6 150 70.0
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 2.8e-41 173.7 144 67.4
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 1.1e-40 171.8 207 49.8
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 1.8e-40 171.0 92 93.5
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.2e-39 168.3 125 69.6
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 4.4e-39 166.4 125 73.6
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 2.9e-38 163.7 116 75.9
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 8.4e-30 135.6 178 53.9
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.2e-28 131.7 120 60.8
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 8.7e-27 125.6 69 78.3
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.5e-26 124.8 91 69.2
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.4e-24 118.2 148 43.2
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 6.9e-24 115.9 81 70.4
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.9e-19 100.1 76 69.7
BolC7t41419H Brassica oleracea HOM05D004899 ORTHO05D006580 1.9e-18 97.8 63 73.0
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 4.8e-17 93.2 50 78.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 8.2e-17 92.4 81 64.2
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.0e-15 87.8 65 66.2
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.9e-14 84.0 57 70.2
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 1.3e-11 75.1 44 81.8
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 4.1e-08 63.5 47 61.7
A04p04990 Brassica napus HOM05D004899 ORTHO05D006580 6.9e-08 62.8 43 69.8
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 1.2e-07 62.0 38 81.6
BolC1t02169H Brassica oleracea HOM05D004899 ORTHO05D006580 3.4e-07 60.5 37 83.8
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 5.9e-07 59.7 35 80.0
SalBow5G1052 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.0e-06 58.9 68 47.1
SalBow6G4382 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.0e-06 58.9 68 47.1
SalBow8G1246 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.0e-06 58.9 68 47.1
BcaB06g28621 Brassica carinata HOM05D002665 ORTHO05D002991 3.8e-06 57.0 30 83.3
BcaB08g35980 Brassica carinata HOM05D042867 ORTHO05D094468 5.0e-06 56.6 83 45.8


User provided reference genes

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