Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 3745.3 1903 100.0
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 3501.8 1906 93.4
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 3444.1 1908 91.9
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 3436.4 1906 91.4
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 3424.0 1905 91.2
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 3419.4 1902 92.0
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 3349.3 1934 89.6
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3346.2 1906 90.5
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3340.8 1903 90.5
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3334.7 1898 90.5
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 3330.8 1930 89.3
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 3310.4 1951 88.3
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3297.3 1900 89.5
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 3272.3 1958 87.1
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 3235.3 1923 86.5
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 3069.3 1898 85.3
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2926.7 1915 78.3
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2761.1 1913 74.2
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2407.9 1989 64.2
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2390.9 2040 62.5
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2384.0 1983 63.8
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2376.3 2010 62.9
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2364.0 1995 62.9
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2355.9 1992 63.3
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2340.5 2028 62.2
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2312.3 1989 62.6
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2310.8 1965 63.6
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2308.1 1995 62.6
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2303.1 1968 63.2
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2300.0 1980 63.0
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2296.2 1998 60.6
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2293.5 1988 61.6
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2291.2 1992 61.5
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2281.5 2120 59.5
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2253.8 2005 60.0
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2235.3 1977 60.6
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2234.5 1973 61.7
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2231.8 1979 61.0
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2227.2 1973 61.5
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2224.5 1986 60.6
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2223.0 1979 60.8
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2222.2 1992 60.7
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2219.1 1992 60.8
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2207.6 2057 59.5
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2201.0 1987 60.1
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2194.1 1979 59.3
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2188.3 1986 60.4
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2188.3 1992 59.5
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2182.1 1977 60.3
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2179.1 2001 59.9
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2177.9 1984 59.9
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2170.2 1970 59.7
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2166.3 1972 59.7
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2158.3 1984 59.3
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2139.8 1985 59.4
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2138.6 1980 59.8
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2120.9 1992 59.1
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2120.1 2032 58.1
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2120.1 1992 57.6
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2118.2 2101 55.3
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2107.0 1976 58.9
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2087.0 1979 57.6
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2081.6 2008 56.8
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2079.7 2003 56.9
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2070.0 1996 56.7
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2065.8 1977 56.3
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2063.9 2004 57.4
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2063.9 1987 55.9
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2055.8 1950 57.9
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2048.9 2090 54.5
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2038.1 1981 56.8
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2029.2 1841 59.3
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2026.9 2050 54.9
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2017.3 2008 56.9
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2012.3 2010 55.6
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2009.2 2019 55.6
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2008.0 1950 57.2
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1992.6 2049 55.1
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1990.3 1993 54.6
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 1946.0 1963 54.4
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1915.6 1982 53.0
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1914.0 1993 55.0
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1885.5 1672 60.3
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1842.4 2001 52.9
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1833.5 2146 50.6
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1824.7 1882 53.6
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1779.2 1898 53.3
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1724.1 2005 50.8
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1699.9 1754 52.7
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1657.9 1651 55.3
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1611.3 1430 62.0
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1596.6 1728 51.8
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1538.1 1973 47.6
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1498.4 1695 51.7
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1492.2 1490 55.4
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1464.5 1363 58.3
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1370.1 1215 59.3
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1231.5 2022 40.4
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1227.6 1906 40.8
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1166.0 1187 55.6
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1149.4 1597 42.5
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1147.5 1171 55.1
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1132.9 1393 47.4
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1078.9 777 70.9
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.2e-301 1040.0 777 69.2
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 5.3e-279 965.7 787 63.7
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 4.1e-255 886.3 836 56.3
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 9.1e-255 885.2 962 51.2
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 6.1e-251 872.5 1008 49.0
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 1.0e-245 855.1 2145 32.6
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.8e-234 817.8 2151 31.8
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 3.0e-218 763.8 1184 40.6
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 7.5e-209 732.6 1253 39.9
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 4.9e-192 676.8 1015 42.0
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 1.9e-188 664.8 1986 30.3
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.5e-172 612.1 415 71.6
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.7e-166 591.3 1891 28.2
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.4e-154 552.4 1597 30.6
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.9e-152 544.7 587 50.9
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.3e-149 535.8 641 49.6
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 5.7e-148 530.4 542 53.9
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 9.7e-132 476.5 320 71.2
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 4.2e-119 434.5 502 51.0
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.7e-99 369.4 785 36.4
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 7.8e-97 360.5 304 62.2
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.6e-92 345.5 357 50.7
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 2.6e-92 345.5 486 44.2
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.2e-91 342.4 375 50.4
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.7e-88 332.8 219 72.6
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.5e-84 319.7 283 59.4
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 4.3e-79 301.6 196 75.5
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 5.6e-79 301.2 242 64.5
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 5.6e-79 301.2 382 51.0
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.2e-78 300.1 210 69.0
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-69 268.5 1096 27.1
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 1.7e-64 253.1 165 72.1
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.4e-61 242.7 162 71.6
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 7.1e-58 231.1 160 70.0
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.3e-54 220.3 302 45.4
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 4.0e-53 215.3 255 49.4
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.5e-52 213.4 292 44.5
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.9e-51 209.1 149 67.8
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 1.8e-48 199.9 427 37.0
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 6.2e-46 191.4 322 40.1
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 2.0e-44 186.4 195 55.4
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.2e-43 183.0 124 66.1
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 3.0e-40 172.6 218 49.5
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.9e-39 169.9 575 27.8
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 6.2e-38 164.9 386 35.5
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.4e-37 163.7 118 76.3
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.4e-36 159.1 324 35.2
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 5.1e-32 145.2 130 62.3
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 2.6e-28 132.9 90 70.0
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 8.5e-27 127.9 57 91.2
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 5.5e-26 125.2 441 32.2
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 9.1e-21 107.8 109 56.0
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 9.1e-21 107.8 109 56.0
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.3e-19 104.0 153 44.4
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 3.8e-19 102.4 182 40.7
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 3.2e-18 99.4 109 51.4
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 2.7e-17 96.3 68 64.7
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 3.6e-17 95.9 118 44.1
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 8.8e-16 91.3 75 61.3
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 8.8e-16 91.3 75 61.3
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 3.7e-14 85.9 61 67.2
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 3.9e-08 65.9 70 48.6
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 6.7e-08 65.1 160 35.6
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 1.1e-07 64.3 60 60.0
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 2.0e-07 63.5 144 33.3
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 2.6e-07 63.2 85 42.4
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 2.6e-07 63.2 126 38.1
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-06 60.1 77 42.9


User provided reference genes

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