Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 0.0e+00 4177.9 2223 100.0
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 0.0e+00 2838.1 2250 72.8
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 2556.9 2233 68.0
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 0.0e+00 2550.4 2233 67.8
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 0.0e+00 2525.7 2251 67.5
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 0.0e+00 2425.2 2092 67.4
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 0.0e+00 2317.7 2084 65.4
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 0.0e+00 2155.2 2262 60.0
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 0.0e+00 2137.5 2232 61.1
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 2072.0 2234 58.9
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 0.0e+00 2065.4 2234 58.7
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 0.0e+00 1988.0 2236 56.8
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 0.0e+00 1984.1 2237 56.9
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 0.0e+00 1679.8 2347 49.6
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 0.0e+00 1327.0 2275 44.9
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 0.0e+00 1079.7 1695 47.0
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.9e-195 688.3 1476 40.7
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 1.9e-147 528.9 2081 31.9
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 6.8e-145 520.4 2115 29.9
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 1.5e-144 519.2 783 50.2
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 5.8e-144 517.3 935 44.8
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 7.6e-144 516.9 2157 30.9
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.0e-140 506.5 2133 30.8
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 6.6e-140 503.8 2126 30.1
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 5.6e-139 500.7 2105 31.0
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 5.6e-139 500.7 2142 30.6
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.2e-138 499.6 2157 28.5
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 2.1e-138 498.8 2096 30.9
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.4e-137 495.4 2160 30.9
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 4.4e-136 491.1 2189 30.4
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.8e-135 488.0 778 48.3
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 4.9e-135 487.6 870 44.5
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.1e-134 486.5 2159 30.7
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.4e-134 486.1 786 48.1
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.9e-134 485.7 840 46.9
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 2.1e-133 482.3 848 45.2
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 4.6e-133 481.1 2159 29.5
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.6e-133 481.1 834 45.0
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 6.0e-133 480.7 835 45.3
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 1.3e-132 479.6 2172 30.8
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.7e-132 479.2 947 42.6
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 2.3e-132 478.8 806 45.7
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 3.0e-132 478.4 834 44.8
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 9.6e-131 473.4 803 47.1
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.3e-130 473.0 835 45.0
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 2.4e-129 468.8 789 46.9
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 3.1e-129 468.4 816 45.2
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 9.0e-129 466.8 921 42.1
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 2.0e-128 465.7 731 49.4
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 2.6e-128 465.3 885 44.1
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 3.4e-128 464.9 820 45.1
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.5e-128 464.5 834 44.8
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 3.8e-127 461.5 2174 29.8
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 8.4e-127 460.3 745 48.3
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.4e-126 459.5 2154 31.2
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 2.7e-125 455.3 958 42.2
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 3.5e-125 454.9 830 45.2
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 4.6e-125 454.5 733 47.7
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 2.3e-124 452.2 815 46.4
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.9e-123 449.1 789 46.6
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.5e-123 448.7 732 47.4
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 7.4e-123 447.2 764 46.9
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.6e-122 446.0 2164 28.8
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 3.1e-121 441.8 814 43.6
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 6.9e-121 440.7 481 60.7
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 9.0e-121 440.3 808 41.8
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.9e-119 435.3 728 47.5
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 5.5e-118 431.0 2013 28.8
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 2.7e-117 428.7 2045 29.5
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 1.8e-116 426.0 776 44.5
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 3.9e-116 424.9 716 46.6
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 3.3e-115 421.8 2031 31.1
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 7.4e-115 420.6 2109 29.4
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.5e-112 412.9 734 45.8
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.3e-111 409.8 1334 34.0
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 3.2e-110 405.2 1881 29.1
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.2e-109 403.3 847 41.1
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 1.6e-109 402.9 734 45.6
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 9.7e-107 393.7 782 43.5
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 1.6e-106 392.9 1135 35.9
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 4.1e-105 388.3 1150 36.2
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 6.9e-105 387.5 742 45.0
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.0e-103 383.6 615 42.3
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 5.0e-103 381.3 780 42.8
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 9.4e-102 377.1 736 44.3
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.2e-101 376.7 846 41.0
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 6.1e-101 374.4 804 41.5
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.8e-97 362.8 871 33.8
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 8.5e-95 354.0 817 40.8
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 7.2e-94 350.9 431 57.1
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 3.9e-92 345.1 1170 33.7
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 2.0e-91 342.8 803 38.0
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.3e-90 340.1 530 50.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 6.3e-90 337.8 933 35.5
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 1.2e-88 333.6 802 39.8
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.0e-88 332.8 629 39.3
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 1.0e-87 330.5 479 51.1
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.7e-87 329.7 752 41.8
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 3.2e-86 325.5 760 40.9
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.8e-84 319.7 660 44.2
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 5.7e-83 314.7 970 34.8
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 7.4e-83 314.3 980 34.9
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 5.9e-80 304.7 511 41.9
BraA06t24858Z Brassica rapa HOM05D000237 ORTHO05D006530 5.0e-79 301.6 258 67.4
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 4.2e-78 298.5 2125 26.8
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 5.7e-75 288.1 629 38.6
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 2.2e-71 276.2 340 55.9
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 1.4e-68 266.9 588 42.5
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 3.7e-66 258.8 734 36.9
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 5.4e-65 255.0 282 50.4
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 5.0e-63 248.4 2231 25.9
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.8e-60 240.0 257 51.0
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 1.3e-55 223.8 1881 25.0
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 3.4e-51 209.1 277 54.2
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 6.6e-47 194.9 224 50.0
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 2.5e-46 193.0 498 41.2
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 4.9e-42 178.7 494 36.4
BcaC04g19090 Brassica carinata HOM05D001762 ORTHO05D001774 1.7e-34 153.7 106 73.6
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 4.1e-33 149.1 136 58.1
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 3.6e-29 136.0 81 79.0
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 6.8e-28 131.7 213 39.4
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 3.3e-22 112.8 770 24.7
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.3e-21 110.9 552 28.3
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 8.1e-21 108.2 497 27.2
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 2.9e-18 99.8 157 63.1
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.4e-17 96.7 202 51.5
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.5e-14 87.4 92 55.4
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 5.6e-14 85.5 253 30.0
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 7.3e-14 85.1 136 41.9
BcaB03g12812 Brassica carinata HOM05D000237 ORTHO05D006530 4.8e-13 82.4 65 66.2
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 2.4e-12 80.1 320 29.1
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 4.5e-11 75.9 140 37.9
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 7.6e-11 75.1 94 45.7
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.9e-09 70.5 128 38.3
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.9e-09 70.5 311 29.3


User provided reference genes

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