Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 1.3e-271 939.1 481 100.0
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.1e-238 829.7 482 87.6
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 1.0e-234 816.6 481 83.8
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 5.0e-234 814.3 481 85.4
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 1.6e-232 809.3 481 82.1
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 2.0e-230 802.4 481 85.0
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 8.2e-229 797.0 483 86.7
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 5.0e-226 787.7 486 86.0
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 3.2e-225 785.0 497 84.3
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 7.9e-224 780.4 475 84.6
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 8.5e-202 707.2 482 74.1
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.2e-200 703.4 479 71.8
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 2.0e-190 669.5 481 73.6
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 1.4e-175 620.2 480 64.0
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.4e-172 610.1 394 74.1
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 9.2e-172 607.4 400 72.5
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.6e-171 606.7 400 72.8
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 2.5e-169 599.4 394 72.8
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 7.3e-169 597.8 389 73.3
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 8.1e-168 594.3 431 71.0
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.4e-167 593.6 440 66.1
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 1.8e-167 593.2 384 74.0
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 4.0e-167 592.0 461 64.2
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.5e-166 590.1 481 62.4
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 1.5e-166 590.1 388 72.4
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 2.6e-166 589.3 388 72.4
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 2.6e-166 589.3 381 73.2
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 4.4e-166 588.6 384 72.1
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 9.9e-166 587.4 384 72.1
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 1.3e-165 587.0 432 68.5
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 6.4e-165 584.7 451 69.0
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 1.1e-164 583.9 381 72.7
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 1.4e-164 583.6 387 71.1
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 2.4e-164 582.8 406 70.7
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 3.2e-164 582.4 384 72.9
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 1.6e-163 580.1 384 70.6
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 1.0e-162 577.4 381 72.4
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.0e-162 577.4 452 68.1
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 1.3e-162 577.0 404 70.3
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.7e-162 576.6 460 63.3
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 3.0e-162 575.9 384 70.3
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 3.9e-162 575.5 489 60.3
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 5.1e-162 575.1 384 70.6
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 8.6e-162 574.3 389 73.0
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 8.6e-162 574.3 381 72.4
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 1.9e-161 573.2 406 69.7
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 4.3e-161 572.0 384 70.8
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 4.3e-161 572.0 381 71.9
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 1.2e-160 570.5 406 69.7
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 1.2e-160 570.5 384 70.6
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.7e-160 568.5 398 68.1
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.8e-159 566.6 396 70.5
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 5.2e-159 565.1 387 69.5
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 5.2e-159 565.1 429 66.2
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 8.9e-159 564.3 432 66.7
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.2e-158 563.9 385 71.2
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 3.4e-158 562.4 398 67.1
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 5.8e-158 561.6 398 67.1
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 1.3e-157 560.5 396 68.4
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 2.2e-157 559.7 434 64.7
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 2.9e-157 559.3 400 67.0
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 8.4e-157 557.8 398 66.6
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.4e-156 557.0 438 64.8
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 1.0e-154 550.8 384 68.2
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 1.0e-154 550.8 384 67.7
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 5.1e-154 548.5 398 68.3
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.1e-153 547.4 398 66.8
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 1.9e-153 546.6 384 69.0
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 3.3e-153 545.8 384 66.9
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.6e-152 543.5 387 67.2
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 8.1e-152 541.2 367 69.5
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 3.1e-151 539.3 385 67.5
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 6.9e-151 538.1 405 66.4
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 3.4e-150 535.8 381 66.7
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 5.8e-150 535.0 381 67.7
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.7e-149 533.5 336 73.8
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 3.8e-149 532.3 414 64.3
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 2.4e-148 529.6 415 65.3
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.1e-147 526.6 399 65.7
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 4.6e-147 525.4 369 66.9
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 1.0e-146 524.2 450 61.6
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 8.7e-146 521.2 381 66.4
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.9e-145 520.0 332 72.9
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 5.6e-145 518.5 332 73.2
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 9.6e-145 517.7 398 63.1
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 4.0e-143 512.3 367 65.1
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 9.0e-143 511.1 450 59.6
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 4.5e-142 508.8 343 72.0
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 1.4e-140 503.8 401 62.6
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 2.8e-136 489.6 427 61.6
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 1.4e-135 487.3 409 60.4
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.2e-133 479.9 318 70.1
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.4e-127 460.7 346 66.2
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.4e-127 459.9 398 58.0
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.9e-124 450.3 381 59.1
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 5.5e-124 448.7 332 64.5
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 4.6e-123 445.7 376 62.2
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.8e-122 443.7 281 74.4
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.3e-122 443.4 455 53.4
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 5.1e-122 442.2 324 66.7
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 4.8e-112 409.1 441 51.9
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 8.2e-112 408.3 359 54.6
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 2.4e-111 406.8 452 51.5
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 5.1e-106 389.0 281 79.4
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 1.1e-105 387.9 306 67.0
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.2e-102 377.9 384 54.7
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 7.7e-94 348.6 209 79.4
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 2.5e-92 343.6 213 73.7
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 2.1e-91 340.5 172 95.3
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.6e-91 339.7 262 63.4
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 2.0e-86 323.9 381 46.5
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 5.7e-81 305.8 362 45.9
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 3.7e-80 303.1 401 42.1
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 2.0e-78 297.4 302 55.3
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 2.7e-78 297.0 175 81.7
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.1e-75 287.3 273 56.0
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 4.6e-70 269.6 279 46.6
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 2.6e-65 253.8 223 58.7
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 9.8e-65 251.9 226 58.4
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 1.9e-63 247.7 182 62.6
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.1e-63 246.5 226 57.5
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 3.4e-57 226.9 246 54.1
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 1.3e-56 224.9 172 60.5
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 5.6e-52 209.5 293 42.0
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 4.1e-47 193.4 130 71.5
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.6e-43 180.3 162 57.4
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.6e-35 154.8 88 80.7
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 5.8e-33 146.4 75 89.3
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 4.8e-27 126.7 143 51.0
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.1e-26 125.6 366 32.5
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 4.0e-26 123.6 233 36.5
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 3.4e-25 120.6 67 86.6
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 4.0e-18 97.1 110 48.2
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 4.9e-16 90.1 120 41.7
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 1.4e-15 88.6 71 63.4
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.5e-15 87.8 55 72.7
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 1.3e-11 75.5 63 60.3
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 6.9e-10 69.7 38 78.9
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 5.0e-08 63.5 32 93.8
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 6.5e-08 63.2 177 28.2
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 8.4e-08 62.8 77 42.9
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 1.1e-07 62.4 39 64.1


User provided reference genes

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