Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g06200 Schrenkiella parvula HOM05D003218 ORTHO05D003702 1.4e-99 366.3 186 100.0
Thhalv10007947m.g Eutrema salsugineum HOM05D003218 ORTHO05D003702 1.8e-86 322.8 181 90.1
BraA08t35471Z Brassica rapa HOM05D003218 ORTHO05D003702 3.9e-86 321.6 181 88.4
A08p35650 Brassica napus HOM05D003218 ORTHO05D003702 1.1e-85 320.1 181 87.8
BcaC07g41996 Brassica carinata HOM05D003218 ORTHO05D003702 1.9e-85 319.3 181 86.7
BolC8t47106H Brassica oleracea HOM05D003218 ORTHO05D003702 4.3e-85 318.2 181 87.3
Thhalv10007946m.g Eutrema salsugineum HOM05D003218 ORTHO05D003702 5.6e-85 317.8 181 87.8
BraA09t41976Z Brassica rapa HOM05D003218 ORTHO05D003702 9.6e-85 317.0 181 86.7
BcaC07g42470 Brassica carinata HOM05D003218 ORTHO05D003702 2.1e-84 315.8 182 87.9
C08p03080 Brassica napus HOM05D003218 ORTHO05D003702 8.1e-84 313.9 181 83.4
C08p50560 Brassica napus HOM05D003218 ORTHO05D003702 8.1e-84 313.9 181 85.6
BolC8t52583H Brassica oleracea HOM05D003218 ORTHO05D003702 8.1e-84 313.9 181 85.6
A09p66400 Brassica napus HOM05D003218 ORTHO05D003702 1.4e-83 313.2 181 85.6
Carub.0001s0677 Capsella rubella HOM05D003218 ORTHO05D003702 2.6e-82 308.9 181 84.5
BcaB02g06738 Brassica carinata HOM05D003218 ORTHO05D003702 2.4e-80 302.4 181 85.6
AT1G07470 Arabidopsis thaliana HOM05D003218 ORTHO05D003702 7.1e-80 300.8 181 84.5
AT1G07480 Arabidopsis thaliana HOM05D003218 ORTHO05D003702 9.3e-80 300.4 181 84.5
Carub.0001s0680 Capsella rubella HOM05D003218 ORTHO05D003702 8.7e-78 293.9 181 80.7
AL1G17650 Arabidopsis lyrata HOM05D003218 ORTHO05D003702 1.5e-77 293.1 181 82.9
BcaC05g24697 Brassica carinata HOM05D003218 ORTHO05D003702 8.2e-76 287.3 181 79.0
BraA10t42863Z Brassica rapa HOM05D003218 ORTHO05D003702 6.5e-73 277.7 182 80.8
AL1G17620 Arabidopsis lyrata HOM05D003218 ORTHO05D003702 2.7e-71 272.3 181 79.0
BcaB03g13393 Brassica carinata HOM05D003218 ORTHO05D003702 4.3e-69 265.0 181 79.0
Aa31LG1G6850 Aethionema arabicum HOM05D003218 ORTHO05D003702 2.9e-65 252.3 177 71.8
C05p05490 Brassica napus HOM05D003218 ORTHO05D003702 8.5e-65 250.8 181 74.0
BolC5t29321H Brassica oleracea HOM05D003218 ORTHO05D003702 8.5e-65 250.8 181 74.0
THA.LOC104815781 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 5.7e-61 238.0 179 73.2
Aa31LG5G7120 Aethionema arabicum HOM05D003218 ORTHO05D003702 1.1e-59 233.8 177 70.1
THA.LOC104800687 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 4.2e-56 221.9 181 65.2
CARHR007250 Cardamine hirsuta HOM05D003218 ORTHO05D003702 2.0e-53 213.0 194 65.5
BcaC05g24695 Brassica carinata HOM05D003218 ORTHO05D003702 5.7e-53 211.5 181 66.9
A10p06010 Brassica napus HOM05D003218 ORTHO05D003702 1.5e-50 203.4 176 67.6
Gohir.A07G100400 Gossypium hirsutum HOM05D003218 ORTHO05D003702 1.3e-49 200.3 190 62.6
Gohir.D07G104600 Gossypium hirsutum HOM05D003218 ORTHO05D003702 8.5e-49 197.6 190 62.1
Gorai.001G112500 Gossypium raimondii HOM05D003218 ORTHO05D003702 2.5e-48 196.1 190 62.1
Thecc.09G315600 Theobroma cacao HOM05D003218 ORTHO05D003702 3.6e-47 192.2 190 61.6
Duzib168G2307 Durio zibethinus HOM05D003218 ORTHO05D003702 1.0e-46 190.7 191 55.5
TWI75G0827 Tripterygium wilfordii HOM05D003218 ORTHO05D003702 1.0e-46 190.7 188 56.9
Gohir.A05G093100 Gossypium hirsutum HOM05D003218 ORTHO05D003702 1.8e-46 189.9 190 54.7
Gorai.009G096500 Gossypium raimondii HOM05D003218 ORTHO05D003702 6.7e-46 188.0 190 57.9
CiPaw.13G089300 Carya illinoinensis HOM05D003218 ORTHO05D003702 3.3e-45 185.7 196 56.1
Cpa.g.sc81.98 Carica papaya HOM05D003218 ORTHO05D003702 1.7e-44 183.3 193 54.9
CiPaw.14G065100 Carya illinoinensis HOM05D003218 ORTHO05D003702 4.8e-44 181.8 195 53.3
Prupe.6G070500 Prunus persica HOM05D003218 ORTHO05D003702 4.8e-44 181.8 188 55.3
Ciclev10028561m.g Citrus clementina HOM05D003218 ORTHO05D003702 6.3e-44 181.4 210 51.4
EL10Ac7g16069 Beta vulgaris HOM05D003218 ORTHO05D003702 8.2e-44 181.0 195 54.4
VMungo1080G1854 Vigna mungo HOM05D003218 ORTHO05D003702 8.2e-44 181.0 186 55.4
AUR62001737 Chenopodium quinoa HOM05D003218 ORTHO05D003702 1.4e-43 180.3 195 54.9
AUR62020038 Chenopodium quinoa HOM05D003218 ORTHO05D002695 1.4e-43 180.3 195 54.4
Manes.01G169400 Manihot esculenta HOM05D003218 ORTHO05D003702 1.4e-43 180.3 210 55.2
CANSAT54G1307 Cannabis sativa HOM05D003218 ORTHO05D003702 5.3e-43 178.3 193 51.8
Sc21g0006020 Simmondsia chinensis HOM05D003218 ORTHO05D003702 9.1e-43 177.6 197 53.3
Lj3g0009557 Lotus japonicus HOM05D003218 ORTHO05D003702 1.6e-42 176.8 186 54.8
COL.COLO4_18577 Corchorus olitorius HOM05D003218 ORTHO05D003702 2.0e-42 176.4 213 49.8
Atru.chr3.3992 Acer truncatum HOM05D003218 ORTHO05D003702 3.5e-42 175.6 205 51.7
Glyma.13G339000 Glycine max HOM05D003218 ORTHO05D003702 3.5e-42 175.6 204 51.5
QL01p029248 Quercus lobata HOM05D003218 ORTHO05D003702 5.9e-42 174.9 214 48.6
Glyma.15G035300 Glycine max HOM05D003218 ORTHO05D003702 7.7e-42 174.5 186 53.2
Haze_24169 Corylus avellana HOM05D003218 ORTHO05D003702 1.3e-41 173.7 195 54.4
Eucgr.J02029 Eucalyptus grandis HOM05D003218 ORTHO05D003702 1.7e-41 173.3 189 53.4
Haze_24174 Corylus avellana HOM05D003218 ORTHO05D003702 3.8e-41 172.2 195 53.8
Aa31LG1G6790 Aethionema arabicum HOM05D003218 ORTHO05D003702 6.5e-41 171.4 176 55.7
Aa31LG1G6820 Aethionema arabicum HOM05D003218 ORTHO05D003702 6.5e-41 171.4 176 55.7
Lalb_Chr01g0003481 Lupinus albus HOM05D003218 ORTHO05D003702 6.5e-41 171.4 191 51.8
Phvul.005G159000 Phaseolus vulgaris HOM05D003218 ORTHO05D003702 6.5e-41 171.4 186 52.7
Glyma.11G136100 Glycine max HOM05D003218 ORTHO05D003702 1.5e-40 170.2 202 55.9
Lj3g0024298 Lotus japonicus HOM05D003218 ORTHO05D003702 1.5e-40 170.2 187 53.5
CARHR007220 Cardamine hirsuta HOM05D003218 ORTHO05D003702 2.5e-40 169.5 181 55.2
Hund04922 Selenicereus undatus HOM05D003218 ORTHO05D003702 2.5e-40 169.5 191 51.3
PGR102G0701 Punica granatum HOM05D003218 ORTHO05D003702 3.2e-40 169.1 186 58.6
Lalb_Chr24g0397181 Lupinus albus HOM05D003218 ORTHO05D003702 1.2e-39 167.2 186 52.2
Phvul.L008243 Phaseolus vulgaris HOM05D003218 ORTHO05D003702 1.6e-39 166.8 186 52.7
Lalb_Chr03g0026451 Lupinus albus HOM05D003218 ORTHO05D003702 2.1e-39 166.4 185 53.0
Potri.009G036700 Populus trichocarpa HOM05D003218 ORTHO05D003702 2.1e-39 166.4 212 50.0
Manes.02G128700 Manihot esculenta HOM05D003218 ORTHO05D003702 2.7e-39 166.0 211 51.2
arahy.Tifrunner.gnm1.ann1.4KG4VQ Arachis hypogaea HOM05D003218 ORTHO05D003702 8.0e-39 164.5 195 51.8
Glyma.12G059800 Glycine max HOM05D003218 ORTHO05D003702 1.4e-38 163.7 204 53.4
GSVIVG01024907001 Vitis vinifera HOM05D003218 ORTHO05D003702 1.4e-38 163.7 191 48.7
Ah.08g220030 Amaranthus hybridus HOM05D003218 ORTHO05D003702 2.3e-38 162.9 189 49.2
Lalb_Chr19g0137971 Lupinus albus HOM05D003218 ORTHO05D003702 1.5e-37 160.2 191 49.2
TAR623G0488 Trochodendron aralioides HOM05D003218 ORTHO05D003702 2.6e-37 159.5 189 48.7
THA.LOC104810753 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 4.4e-37 158.7 181 53.0
Ah.15g098630 Amaranthus hybridus HOM05D003218 ORTHO05D003702 7.5e-37 157.9 191 49.7
RcHm_v2.0_Chr5g0066351 Rosa chinensis HOM05D003218 ORTHO05D003702 7.5e-37 157.9 193 53.9
Potri.001G244204 Populus trichocarpa HOM05D003218 ORTHO05D003702 9.7e-37 157.5 212 50.9
Hund18888 Selenicereus undatus HOM05D003218 ORTHO05D003702 9.7e-37 157.5 218 46.8
CAN.G394.76 Capsicum annuum HOM05D003218 ORTHO05D003702 1.3e-36 157.1 211 46.4
Migut.D00878 Erythranthe guttata HOM05D003218 ORTHO05D003702 1.3e-36 157.1 214 49.1
Ca_01303_v3 Cicer arietinum L. HOM05D003218 ORTHO05D003702 1.7e-36 156.8 188 51.1
MD03G1086200 Malus domestica HOM05D003218 ORTHO05D003702 2.2e-36 156.4 190 56.3
Lj1A146G69 Lonicera japonica HOM05D003218 ORTHO05D003702 2.8e-36 156.0 211 49.3
DCAR_018926 Daucus carota HOM05D003218 ORTHO05D003702 6.3e-36 154.8 195 50.3
Nn2g11208 Nelumbo nucifera HOM05D003218 ORTHO05D003702 6.3e-36 154.8 187 54.5
Nn2g13454 Nelumbo nucifera HOM05D003218 ORTHO05D003702 6.3e-36 154.8 181 51.9
Sed0005039 Sechium edule HOM05D003218 ORTHO05D003702 6.3e-36 154.8 208 45.2
Dinv34286 Davidia involucrata HOM05D003218 ORTHO05D003702 8.3e-36 154.5 206 47.6
MD11G1094800 Malus domestica HOM05D003218 ORTHO05D003702 1.1e-35 154.1 191 54.5
TPR.G6857 Trifolium pratense HOM05D003218 ORTHO05D003702 1.1e-35 154.1 190 50.5
vmacro14557 Vaccinium macrocarpon HOM05D003218 ORTHO05D003702 1.1e-35 154.1 203 49.3
MELO3C025890.2 Cucumis melo HOM05D003218 ORTHO05D003702 2.4e-35 152.9 201 46.3
Sed0005276 Sechium edule HOM05D003218 ORTHO05D003702 3.1e-35 152.5 198 47.5
Solyc06g076390.3 Solanum lycopersicum HOM05D003218 ORTHO05D003702 4.1e-35 152.1 210 47.1
Sopen06g032800 Solanum pennellii HOM05D003218 ORTHO05D003702 4.1e-35 152.1 210 47.1
arahy.Tifrunner.gnm1.ann1.Q1GILX Arachis hypogaea HOM05D003218 ORTHO05D003702 1.2e-34 150.6 195 50.3
FvH4_3g36940 Fragaria vesca HOM05D003218 ORTHO05D003702 1.6e-34 150.2 177 53.1
FAN21G3821 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.6e-34 150.2 176 50.0
Actinidia34426 Actinidia chinensis HOM05D003218 ORTHO05D003702 2.0e-34 149.8 217 46.5
CSS0023241 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 3.5e-34 149.1 216 47.2
arahy.Tifrunner.gnm1.ann1.C2EA1B Arachis hypogaea HOM05D003218 ORTHO05D003702 4.5e-34 148.7 195 50.3
FAN11G1275 Fragaria x ananassa HOM05D003218 ORTHO05D003702 4.5e-34 148.7 177 51.4
FAN16G2405 Fragaria x ananassa HOM05D003218 ORTHO05D003702 4.5e-34 148.7 181 50.8
Cc01_g13340 Coffea canephora HOM05D003218 ORTHO05D003702 7.7e-34 147.9 213 47.4
FAN25G2385 Fragaria x ananassa HOM05D003218 ORTHO05D003702 7.7e-34 147.9 181 49.7
SGA_v2.0_scaffold111G31542 Striga asiatica HOM05D003218 ORTHO05D003702 7.7e-34 147.9 212 49.5
Medtr2g097740 Medicago truncatula HOM05D003218 ORTHO05D003702 1.0e-33 147.5 188 47.9
arahy.Tifrunner.gnm1.ann1.ZE4ASG Arachis hypogaea HOM05D003218 ORTHO05D003702 1.7e-33 146.7 207 48.3
THA.LOC104799429 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 2.2e-33 146.4 196 51.0
Nitab4.5_0000463g0110 Nicotiana tabacum HOM05D003218 ORTHO05D003702 1.1e-32 144.1 211 44.1
ECA248G3960 Erigeron canadensis HOM05D003218 ORTHO05D003702 1.5e-32 143.7 204 47.1
HanXRQChr01g0010401 Helianthus annuus HOM05D003218 ORTHO05D003702 7.2e-32 141.4 198 47.5
VMungo1080G0815 Vigna mungo HOM05D003218 ORTHO05D003702 7.2e-32 141.4 186 48.4
Hma1.2p1_0615F.1_g189680 Hydrangea macrophylla HOM05D003218 ORTHO05D003702 9.4e-32 141.0 203 47.3
ClCG02G019890 Citrullus lanatus HOM05D003218 ORTHO05D003702 1.6e-31 140.2 261 38.3
TAR369G0400 Trochodendron aralioides HOM05D003218 ORTHO05D003702 2.1e-31 139.8 170 47.1
arahy.Tifrunner.gnm1.ann1.WL6KIL Arachis hypogaea HOM05D003218 ORTHO05D003702 2.7e-31 139.4 137 56.9
HanXRQChr01g0010631 Helianthus annuus HOM05D003218 ORTHO05D003702 3.6e-31 139.0 198 47.5
Oeu033634.1 Olea europaea HOM05D003218 ORTHO05D003702 3.6e-31 139.0 211 44.5
SalBow2G2908 Salvia bowleyana HOM05D003218 ORTHO05D003702 1.0e-30 137.5 229 41.5
Duzib150G1564 Durio zibethinus HOM05D003218 ORTHO05D003702 1.8e-30 136.7 186 48.4
arahy.Tifrunner.gnm1.ann1.YALI07 Arachis hypogaea HOM05D003218 ORTHO05D003702 2.3e-30 136.3 130 58.5
MBI14_g11605_MAGBIO Magnolia biondii HOM05D003218 ORTHO05D003702 2.3e-30 136.3 190 44.7
Dinv17046 Davidia involucrata HOM05D003218 ORTHO05D003702 1.5e-29 133.7 190 46.8
Oeu007659.1 Olea europaea HOM05D003218 ORTHO05D003702 2.0e-29 133.3 230 43.5
Dinv42990 Davidia involucrata HOM05D003218 ORTHO05D003702 2.6e-29 132.9 194 46.9
Dinv43108 Davidia involucrata HOM05D003218 ORTHO05D003702 2.6e-29 132.9 194 46.9
Rhsim01G0231600 Rhododendron simsii HOM05D003218 ORTHO05D003702 2.6e-29 132.9 208 46.2
MSTRG.21222 Avicennia marina HOM05D003218 ORTHO05D003702 3.4e-29 132.5 225 43.1
CsaV3_6G016600 Cucumis sativus L. HOM05D003218 ORTHO05D003702 9.8e-29 131.0 185 45.9
Lsat_1_v5_gn_5_169601 Lactuca sativa HOM05D003218 ORTHO05D003702 1.3e-28 130.6 212 42.9
Zm00001eb284630 Zea mays HOM05D003218 ORTHO05D003702 4.8e-28 128.6 190 43.7
SGA_v2.0_scaffold54G19476 Striga asiatica HOM05D003218 ORTHO05D003702 1.1e-27 127.5 266 40.2
PSO339G5513 Papaver somniferum HOM05D003218 ORTHO05D003702 3.1e-27 125.9 189 46.0
HPP92_015484 Vanilla planifolia HOM05D003218 ORTHO05D003702 3.1e-27 125.9 184 48.9
PSO063G1745 Papaver somniferum HOM05D003218 ORTHO05D003702 4.1e-27 125.6 189 46.0
Hma1.2p1_1664F.1_g296410 Hydrangea macrophylla HOM05D003218 ORTHO05D003702 7.0e-27 124.8 254 40.2
Rhsim13G0077100 Rhododendron simsii HOM05D003218 ORTHO05D003702 2.7e-26 122.9 218 40.4
HPP92_018049 Vanilla planifolia HOM05D003218 ORTHO05D003702 2.7e-26 122.9 179 44.7
HPP92_018062 Vanilla planifolia HOM05D003218 ORTHO05D003702 2.7e-26 122.9 179 44.7
Actinidia33769 Actinidia chinensis HOM05D003218 ORTHO05D003702 5.9e-26 121.7 216 44.4
ECA247G2536 Erigeron canadensis HOM05D003218 ORTHO05D003702 2.3e-25 119.8 198 44.4
Zm00001eb346300 Zea mays HOM05D003218 ORTHO05D003702 3.8e-25 119.0 194 43.3
Oeu053891.1 Olea europaea HOM05D003218 ORTHO05D003702 1.9e-24 116.7 220 42.7
Peaxi162Scf00481g00330 Petunia axillaris HOM05D003218 ORTHO05D003702 2.5e-24 116.3 114 56.1
Os05g0292200 Oryza sativa ssp. japonica HOM05D003218 ORTHO05D003702 4.2e-24 115.5 135 49.6
Psat5g118600 Pisum sativum HOM05D003218 ORTHO05D003702 8.0e-23 111.3 131 51.1
ATR0559G303 Amborella trichopoda HOM05D003218 ORTHO05D003702 1.4e-22 110.5 129 49.6
Aqoxy1G00871 Aquilegia oxysepala HOM05D003218 ORTHO05D003702 5.2e-22 108.6 142 53.5
SEGI_10054 Sequoiadendron giganteum HOM05D003218 ORTHO05D003702 3.4e-21 105.9 139 44.6
CDE08G0741 Ceratophyllum demersum HOM05D003218 ORTHO05D003702 6.3e-20 101.7 193 41.5
Nitab4.5_0006916g0020 Nicotiana tabacum HOM05D003218 ORTHO05D003702 1.6e-18 97.1 211 36.5
Lsat_1_v5_gn_9_24801 Lactuca sativa HOM05D003218 ORTHO05D003702 2.0e-18 96.7 132 46.2
SHI05909 Sapria himalayana HOM05D003218 ORTHO05D003702 5.9e-18 95.1 169 44.4
Nn3g19604 Nelumbo nucifera HOM05D003218 ORTHO05D003702 7.8e-18 94.7 196 37.2
ATR0680G097 Amborella trichopoda HOM05D003218 ORTHO05D003702 1.7e-17 93.6 128 51.6
CsaV3_7G010010 Cucumis sativus L. HOM05D003218 ORTHO05D003702 1.7e-17 93.6 250 34.0
Sabra16G0148300 Salix brachista HOM05D003218 ORTHO05D003702 2.3e-17 93.2 150 42.0
PGSC0003DMG400030421 Solanum tuberosum HOM05D003218 ORTHO05D003702 2.9e-17 92.8 211 38.4
Aqoxy2G03612 Aquilegia oxysepala HOM05D003218 ORTHO05D003702 5.0e-17 92.0 137 41.6
TAR365G0505 Trochodendron aralioides HOM05D003218 ORTHO05D003702 2.1e-15 86.7 141 42.6
TAR602G0006 Trochodendron aralioides HOM05D003218 ORTHO05D003702 3.1e-14 82.8 142 41.5
Actinidia23918 Actinidia chinensis HOM05D003218 ORTHO05D003702 2.6e-13 79.7 124 46.0
CDE05G1682 Ceratophyllum demersum HOM05D003218 ORTHO05D003702 1.1e-11 74.3 136 43.4
Mapoly0112s0032 Marchantia polymorpha HOM05D003218 ORTHO05D003702 1.4e-11 73.9 108 44.4
Psat5g037120 Pisum sativum HOM05D003218 ORTHO05D003702 7.0e-11 71.6 61 60.7
CSS0034814 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 3.0e-09 66.2 120 46.7
MBI17_g19510_MAGBIO Magnolia biondii HOM05D003218 ORTHO05D003702 2.5e-08 63.2 111 40.5
Aa31LG5G7000 Aethionema arabicum HOM05D003218 ORTHO05D003702 2.1e-07 60.1 105 42.9
SMO223G0009 Selaginella moellendorffii HOM05D003218 ORTHO05D003702 6.2e-07 58.5 105 38.1


User provided reference genes

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