Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.6e-217 758.4 389 100.0
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.0e-177 625.9 374 87.4
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.2e-176 622.5 393 83.5
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 4.7e-174 614.8 394 83.2
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 8.5e-168 594.0 374 84.0
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.4e-167 590.5 378 83.9
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 8.0e-166 587.4 378 83.3
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.4e-165 586.6 378 83.1
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 6.8e-165 584.3 374 81.8
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 5.7e-164 581.3 374 83.2
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-160 569.7 363 82.4
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.4e-154 549.3 356 79.5
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 4.3e-135 485.3 311 76.2
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.8e-134 482.6 384 65.6
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 6.8e-133 478.0 386 63.7
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 2.0e-132 476.5 347 69.2
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 7.5e-132 474.6 353 67.7
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 9.8e-132 474.2 348 69.8
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 8.3e-131 471.1 306 73.2
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.1e-130 470.7 371 67.1
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.1e-130 470.7 359 67.7
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 3.2e-130 469.2 370 64.6
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 4.1e-130 468.8 346 68.8
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 9.2e-130 467.6 380 64.2
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.2e-129 467.2 371 64.4
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.2e-129 467.2 381 64.0
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 1.6e-129 466.8 377 66.3
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.1e-129 466.5 344 70.3
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 4.6e-129 465.3 371 66.6
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 4.6e-129 465.3 299 74.2
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 6.0e-129 464.9 333 69.1
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 7.8e-129 464.5 341 68.3
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.0e-128 464.2 351 66.4
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.7e-128 463.4 371 64.7
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 1.7e-128 463.4 376 64.6
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.7e-128 463.4 364 65.1
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.7e-128 463.4 374 64.4
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.7e-128 463.4 332 70.8
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 2.3e-128 463.0 336 69.9
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 2.3e-128 463.0 297 74.4
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 3.0e-128 462.6 299 73.6
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 3.9e-128 462.2 352 65.9
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 5.1e-128 461.8 301 73.8
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 6.6e-128 461.5 331 70.1
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 8.6e-128 461.1 373 63.0
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 8.6e-128 461.1 312 72.1
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.1e-127 460.7 324 70.4
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.9e-127 459.9 316 72.5
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 2.5e-127 459.5 307 71.7
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.6e-127 458.4 351 66.7
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 8.1e-126 454.5 290 74.1
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 6.8e-125 451.4 376 65.2
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 1.5e-124 450.3 323 68.7
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.6e-124 449.5 301 72.4
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 5.8e-124 448.4 376 62.0
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 7.6e-124 448.0 335 68.1
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 7.6e-124 448.0 345 67.5
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 9.9e-124 447.6 310 69.4
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 2.2e-123 446.4 303 68.6
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.2e-123 446.4 383 61.4
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 8.3e-123 444.5 315 67.9
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.1e-122 444.1 336 65.2
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.1e-122 444.1 383 62.7
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.1e-122 444.1 378 61.9
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.4e-122 443.7 317 67.5
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 3.2e-122 442.6 363 60.3
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 3.2e-122 442.6 317 67.8
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 4.1e-122 442.2 369 62.3
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.2e-121 440.7 301 70.8
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.7e-121 439.5 375 61.1
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 2.7e-121 439.5 356 66.0
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.3e-120 437.2 352 63.1
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.3e-120 437.2 377 61.5
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.7e-120 436.8 317 68.8
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 2.3e-120 436.4 329 66.0
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 4.7e-118 428.7 390 60.5
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 8.1e-118 427.9 381 60.1
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 2.4e-117 426.4 385 60.0
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 4.0e-117 425.6 438 53.4
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 3.4e-116 422.5 321 66.4
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 3.4e-116 422.5 327 65.4
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 8.4e-115 417.9 357 60.2
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.1e-114 417.5 321 65.4
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 1.9e-114 416.8 373 59.0
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.2e-113 414.1 311 64.3
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 4.6e-113 412.1 304 66.4
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 4.6e-113 412.1 346 59.2
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 6.0e-113 411.8 309 66.0
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.8e-109 400.2 314 61.8
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 2.6e-108 396.4 391 52.9
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 5.4e-106 388.7 375 56.3
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.6e-105 387.1 266 70.7
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 9.6e-103 377.9 343 58.3
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 9.6e-103 377.9 343 58.3
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.3e-99 367.5 375 54.7
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.1e-98 364.4 284 62.0
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.8e-96 357.1 323 56.0
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 4.3e-95 352.4 292 64.4
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 5.6e-95 352.1 299 57.9
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 4.5e-92 342.4 295 59.7
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.4e-90 337.4 290 55.2
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 5.5e-90 335.5 290 54.8
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 4.6e-89 332.4 290 54.5
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.3e-88 330.1 291 53.6
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-88 330.1 291 53.6
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.3e-88 330.1 287 62.0
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 3.0e-88 329.7 271 69.0
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 6.7e-88 328.6 291 53.3
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 8.7e-88 328.2 304 52.6
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-87 327.4 291 53.3
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 3.3e-87 326.2 291 52.9
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 4.3e-87 325.9 308 52.3
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.7e-87 325.5 290 54.8
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 5.7e-87 325.5 266 63.9
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.4e-87 325.1 291 53.6
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.6e-86 323.9 289 52.9
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.8e-86 323.2 291 52.2
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.7e-86 322.8 291 54.3
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.1e-85 319.3 291 52.2
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 6.9e-85 318.5 272 55.9
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.2e-84 317.8 291 53.3
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.4e-84 316.2 291 52.9
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.7e-83 313.9 290 51.7
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.7e-83 313.9 218 69.7
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 8.4e-83 311.6 291 51.5
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.1e-82 311.2 289 51.6
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 3.2e-82 309.7 290 52.1
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 5.5e-82 308.9 291 51.5
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 5.5e-82 308.9 291 51.5
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.5e-82 308.9 289 50.9
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.2e-81 307.8 291 51.9
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.6e-81 307.4 292 51.7
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-81 307.0 296 50.7
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 4.6e-81 305.8 291 50.9
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 4.6e-81 305.8 292 50.7
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.8e-80 303.9 291 50.5
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.9e-79 300.4 292 51.4
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-79 300.1 292 49.7
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 3.3e-79 299.7 292 51.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 3.1e-77 293.1 293 48.1
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 6.9e-77 292.0 291 49.5
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.9e-76 288.9 266 52.3
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.0e-75 288.1 298 48.3
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 6.3e-70 268.9 292 49.0
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 4.1e-69 266.2 278 49.3
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-68 263.8 271 49.4
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 3.8e-67 259.6 241 60.2
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-66 258.1 349 40.1
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 4.7e-65 252.7 275 51.3
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 5.7e-63 245.7 244 50.8
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.8e-56 224.2 260 46.2
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.7e-55 219.2 219 51.6
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 7.0e-53 212.2 189 52.9
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 7.0e-53 212.2 189 52.9
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 2.0e-52 210.7 322 40.4
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 1.7e-46 191.0 189 54.0
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-39 167.5 128 59.4
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 4.9e-38 162.9 128 58.6
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 4.9e-38 162.9 128 58.6
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 2.7e-36 157.1 148 50.0
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.6e-34 149.4 290 32.4
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 9.8e-31 138.7 108 56.5
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.4e-29 134.0 82 75.6
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 4.6e-28 129.8 148 45.9
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 5.2e-24 116.3 105 61.0
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.2e-23 115.2 504 25.2
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 3.0e-19 100.5 64 79.7


User provided reference genes

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