Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 0.0e+00 1437.6 790 100.0
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 0.0e+00 1424.5 790 99.0
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 0.0e+00 1118.6 791 79.3
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 0.0e+00 1105.9 771 80.0
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 0.0e+00 1100.9 791 78.5
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 0.0e+00 1099.3 791 77.5
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.0e-204 716.1 782 57.4
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 8.5e-199 698.0 775 57.8
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 6.1e-189 665.2 800 54.4
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 6.4e-170 602.1 800 51.4
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 1.2e-168 597.8 797 51.6
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 3.9e-159 566.2 803 50.4
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 3.5e-152 543.1 847 48.4
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.0e-143 513.5 821 47.1
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 2.0e-139 500.7 809 47.5
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.2e-137 493.0 820 46.3
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 3.9e-135 486.5 833 44.8
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 4.0e-132 476.5 796 45.6
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 5.3e-132 476.1 600 53.8
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 2.2e-130 470.7 839 44.2
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 3.2e-129 466.8 839 45.2
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 4.2e-129 466.5 662 50.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 4.6e-128 463.0 836 44.3
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 5.1e-127 459.5 829 44.1
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 7.4e-126 455.7 445 61.8
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.1e-125 454.1 829 46.2
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.4e-124 451.4 822 44.5
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 5.3e-124 449.5 843 45.0
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.0e-123 447.6 778 46.1
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.4e-123 446.8 820 43.9
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.9e-122 443.0 822 45.1
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 5.5e-121 439.5 831 43.6
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.6e-120 438.0 809 42.4
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 2.7e-120 437.2 832 42.5
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 3.5e-120 436.8 839 43.6
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.0e-120 436.0 807 43.9
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 8.7e-119 432.2 817 41.7
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.5e-118 430.6 855 42.2
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 3.7e-117 426.8 782 42.1
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-115 421.8 827 43.0
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.5e-115 421.4 648 48.1
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 2.0e-115 421.0 823 41.9
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.0e-114 418.7 827 42.9
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.5e-113 414.1 828 42.4
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.3e-111 408.3 816 40.4
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 1.3e-111 408.3 833 42.0
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 1.8e-111 407.9 835 41.7
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.9e-111 406.8 822 42.0
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 5.1e-111 406.4 850 40.4
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.5e-110 404.1 608 48.7
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 2.1e-109 401.0 822 41.6
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 4.8e-109 399.8 852 40.6
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.8e-108 397.9 814 40.3
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 1.0e-106 392.1 816 40.8
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.2e-106 391.0 819 40.9
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 9.3e-105 385.6 824 40.3
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.2e-104 385.2 818 41.3
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.2e-104 385.2 368 61.7
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.1e-104 384.4 402 59.7
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 3.6e-104 383.6 835 41.1
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.5e-102 377.5 826 39.6
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 2.8e-101 374.0 797 40.4
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 6.3e-101 372.9 832 39.8
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.1e-100 370.2 818 39.9
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 2.2e-98 364.4 850 40.1
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.2e-98 364.4 606 45.5
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 5.0e-98 363.2 853 40.8
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.5e-98 362.8 851 39.0
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 8.5e-98 362.5 829 39.8
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 2.5e-97 360.9 913 37.3
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 2.5e-97 360.9 822 38.3
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.5e-97 360.9 815 38.8
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 9.4e-97 359.0 832 38.6
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 1.6e-96 358.2 825 39.8
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 7.9e-96 355.9 833 40.6
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.4e-95 355.1 1005 35.0
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.1e-94 352.1 839 36.8
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.6e-94 350.9 829 38.4
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 5.7e-94 349.7 836 37.0
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 5.7e-94 349.7 831 39.6
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-93 348.2 829 38.6
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 3.7e-93 347.1 704 42.8
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.1e-92 345.5 758 39.4
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 5.3e-92 343.2 713 40.3
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 9.1e-92 342.4 824 37.6
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 5.9e-91 339.7 832 38.2
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.0e-90 339.0 819 38.3
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 1.0e-90 339.0 727 39.6
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 5.0e-90 336.7 851 36.8
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.1e-88 331.3 827 37.1
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 2.7e-88 330.9 789 38.8
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 3.6e-88 330.5 477 48.6
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 5.2e-87 326.6 582 42.6
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 8.8e-87 325.9 482 48.1
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.3e-85 322.0 829 38.4
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.7e-85 321.6 838 36.0
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.7e-85 320.5 590 42.0
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 3.1e-84 317.4 691 39.5
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 9.1e-84 315.8 297 60.6
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.6e-83 315.1 359 53.5
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 2.9e-82 310.8 869 37.6
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 3.8e-82 310.5 835 36.4
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 3.2e-81 307.4 854 36.7
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 3.2e-81 307.4 824 35.9
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 3.2e-81 307.4 813 36.2
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 9.4e-81 305.8 480 46.0
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 8.0e-80 302.8 540 42.0
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 2.3e-79 301.2 848 36.0
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 3.0e-79 300.8 806 35.6
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.5e-78 298.5 679 38.7
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.8e-76 291.6 570 41.8
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 4.1e-76 290.4 546 41.4
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 5.3e-76 290.0 585 40.3
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 3.5e-75 287.3 614 41.0
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.0e-74 285.8 542 41.9
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 2.9e-74 284.3 824 35.4
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 3.8e-74 283.9 623 39.3
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.0e-71 275.8 524 41.0
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.8e-71 275.0 714 36.0
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.5e-70 271.9 813 33.9
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.0e-70 271.6 823 34.1
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 1.1e-68 265.8 674 36.1
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.8e-68 265.0 793 34.3
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.4e-68 264.6 512 40.6
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 4.1e-68 263.8 842 34.7
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 7.0e-68 263.1 598 38.1
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 9.1e-68 262.7 561 40.1
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 3.5e-67 260.8 453 43.9
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 1.7e-66 258.5 558 40.0
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 2.9e-66 257.7 683 35.3
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 4.7e-64 250.4 672 38.4
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 2.9e-58 231.1 838 33.4
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.5e-57 228.8 813 33.0
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.5e-57 228.0 540 38.3
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.2e-48 199.1 430 38.1
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.6e-48 197.6 602 36.0
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.8e-46 190.3 311 43.1
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.7e-45 187.6 417 36.0
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.4e-44 185.7 412 35.7
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 9.2e-44 183.0 669 32.0
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 7.8e-43 179.9 517 35.6
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 3.0e-42 177.9 166 60.2
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 9.2e-36 156.4 387 35.4
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 3.3e-33 147.9 412 32.5
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 4.3e-33 147.5 113 70.8
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 9.9e-30 136.3 671 26.8
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 2.9e-29 134.8 100 75.0
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 5.1e-26 124.0 416 30.8
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 6.2e-24 117.1 87 73.6
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.1e-23 116.3 106 63.2
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 6.9e-23 113.6 260 39.2
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.6e-18 97.1 70 77.1
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-17 95.5 68 77.9
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-16 92.4 81 65.4
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.8e-16 91.7 63 79.4
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.6e-16 91.3 81 65.4
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-15 89.4 66 74.2
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.2e-14 86.3 276 30.8
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.5e-14 84.3 56 80.4
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.8e-14 84.0 65 72.3
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.8e-14 84.0 56 80.4
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 7.6e-14 83.6 164 36.6
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.9e-14 83.2 55 80.0
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.2e-13 82.0 79 57.0
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.8e-13 81.3 56 78.6
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 3.8e-13 81.3 62 66.1
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.9e-12 79.0 76 55.3
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.2e-12 77.8 513 27.3
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 1.2e-11 76.3 55 67.3
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-11 75.9 50 80.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.6e-11 74.3 50 78.0
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.9e-10 71.2 63 68.3
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 6.7e-10 70.5 57 68.4
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 9.6e-09 66.6 489 27.4
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 3.1e-07 61.6 47 66.0
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.6e-06 58.5 39 74.4
Cre12.g514550 Chlamydomonas reinhardtii HOM05D003628 ORTHO05D004253 7.6e-06 57.0 95 35.8
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.6e-06 57.0 39 71.8
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 9.9e-06 56.6 37 75.7
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 9.9e-06 56.6 37 75.7


User provided reference genes

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