Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g006690 Solanum pennellii HOM05D004052 ORTHO05D004694 1.2e-133 480.3 340 100.0
PGSC0003DMG400007841 Solanum tuberosum HOM05D004052 ORTHO05D004694 2.1e-125 453.0 340 90.9
Solyc12g011360.2 Solanum lycopersicum HOM05D004052 ORTHO05D004694 2.7e-125 452.6 340 93.8
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 6.5e-79 298.5 344 68.9
Nitab4.5_0000505g0150 Nicotiana tabacum HOM05D004052 ORTHO05D004694 2.3e-76 290.0 345 72.8
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 5.1e-76 288.9 372 61.8
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.5e-72 277.3 368 69.8
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 1.0e-68 264.6 367 65.9
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 5.7e-67 258.8 364 65.4
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 2.2e-66 256.9 370 62.7
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 3.7e-66 256.1 369 61.5
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 5.3e-65 252.3 382 58.4
Peaxi162Scf00000g00572 Petunia axillaris HOM05D004052 ORTHO05D004694 1.5e-64 250.8 350 68.0
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 7.9e-61 238.4 363 58.4
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 1.4e-60 237.7 368 45.9
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 4.4e-59 232.6 373 56.8
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 1.7e-58 230.7 387 44.7
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 3.7e-58 229.6 385 44.7
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 1.1e-57 228.0 388 56.7
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 1.1e-57 228.0 387 58.7
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 9.1e-57 224.9 385 54.3
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 3.5e-56 223.0 387 51.9
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 5.9e-56 222.2 384 58.3
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 1.0e-55 221.5 383 44.6
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 3.8e-55 219.5 383 43.1
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 1.9e-54 217.2 383 42.6
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 1.9e-54 217.2 362 56.9
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 3.2e-54 216.5 383 42.3
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 3.2e-54 216.5 374 53.7
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 4.2e-54 216.1 389 44.0
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.6e-53 214.2 387 53.5
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 2.1e-53 213.8 376 52.9
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 2.1e-53 213.8 383 48.6
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 6.1e-53 212.2 379 42.2
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 8.0e-53 211.8 367 43.3
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 2.3e-52 210.3 375 57.3
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 2.3e-52 210.3 369 52.8
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 6.7e-52 208.8 388 42.5
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.1e-51 208.0 372 41.7
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.1e-51 208.0 372 41.7
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 1.5e-51 207.6 383 47.8
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 2.0e-51 207.2 369 53.9
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 5.7e-51 205.7 380 57.1
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 7.5e-51 205.3 416 39.7
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 9.7e-51 204.9 340 55.6
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 9.7e-51 204.9 368 51.6
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 1.3e-50 204.5 380 47.9
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 2.2e-50 203.8 381 52.5
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 3.7e-50 203.0 376 41.2
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 1.4e-49 201.1 385 46.8
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.8e-49 200.7 387 46.5
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 2.4e-49 200.3 386 54.7
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 9.1e-49 198.4 385 45.7
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 9.1e-49 198.4 382 53.7
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 1.6e-48 197.6 438 42.5
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 1.0e-47 194.9 387 43.2
Lj3g0022433 Lotus japonicus HOM05D004052 ORTHO05D004694 5.0e-47 192.6 394 46.4
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 8.5e-47 191.8 378 57.1
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 1.9e-46 190.7 382 46.6
arahy.Tifrunner.gnm1.ann1.SLVF1G Arachis hypogaea HOM05D004052 ORTHO05D004694 2.5e-46 190.3 390 52.8
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 4.2e-46 189.5 389 40.1
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 5.5e-46 189.1 389 51.4
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 3.6e-45 186.4 388 56.2
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 1.4e-44 184.5 374 39.6
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 1.8e-44 184.1 376 50.8
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.8e-44 184.1 385 52.7
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 3.0e-44 183.3 378 55.6
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 4.0e-44 183.0 388 41.2
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 5.2e-44 182.6 347 40.6
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 5.2e-44 182.6 366 42.3
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 5.2e-44 182.6 380 40.3
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 6.8e-44 182.2 429 43.6
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 1.2e-43 181.4 369 57.2
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 7.5e-43 178.7 390 39.2
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 7.5e-43 178.7 379 52.2
AUR62037969 Chenopodium quinoa HOM05D004052 ORTHO05D004694 6.3e-42 175.6 385 48.8
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 1.8e-41 174.1 372 38.2
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.8e-41 174.1 330 41.2
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 2.0e-40 170.6 353 45.9
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 7.7e-40 168.7 370 50.8
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 1.3e-39 167.9 414 37.7
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 2.2e-39 167.2 375 38.7
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 6.5e-39 165.6 359 39.0
MSTRG.6718 Avicennia marina HOM05D004052 ORTHO05D004694 1.9e-38 164.1 390 48.5
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 1.9e-38 164.1 365 37.5
Hund02320 Selenicereus undatus HOM05D004052 ORTHO05D004694 5.5e-38 162.5 387 52.5
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 7.2e-38 162.2 389 36.0
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 2.1e-37 160.6 389 35.2
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 4.7e-37 159.5 372 36.8
Migut.M00589 Erythranthe guttata HOM05D004052 ORTHO05D004694 1.0e-36 158.3 368 46.7
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.8e-36 157.5 372 44.6
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 4.0e-36 156.4 359 45.4
AT1G17140 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 8.8e-36 155.2 359 52.4
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 2.6e-35 153.7 376 37.8
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 2.6e-35 153.7 400 37.8
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 3.4e-35 153.3 384 36.5
Sc03g0007700 Simmondsia chinensis HOM05D004052 ORTHO05D004694 3.4e-35 153.3 359 51.0
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 5.7e-35 152.5 371 38.5
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 1.3e-34 151.4 373 38.9
Oeu020015.2 Olea europaea HOM05D004052 ORTHO05D004694 1.3e-34 151.4 343 48.7
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 2.2e-34 150.6 344 54.7
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 3.1e-33 146.7 349 41.8
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 3.1e-33 146.7 365 44.9
Thhalv10008080m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 3.1e-33 146.7 368 55.4
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 5.4e-33 146.0 370 44.3
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 7.0e-33 145.6 385 35.1
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 1.6e-32 144.4 349 44.4
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.0e-31 141.7 307 38.8
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 2.3e-31 140.6 388 35.3
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 1.5e-30 137.9 362 43.6
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 3.3e-30 136.7 372 34.9
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 3.3e-30 136.7 365 43.3
Carub.0002s2533 Capsella rubella HOM05D004052 ORTHO05D004694 4.3e-30 136.3 349 54.7
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 4.3e-30 136.3 231 43.7
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 1.6e-29 134.4 356 43.0
Carub.0001s1687 Capsella rubella HOM05D004052 ORTHO05D004694 2.8e-29 133.7 354 53.1
SGA_v2.0_scaffold130G34232 Striga asiatica HOM05D004052 ORTHO05D004694 6.1e-29 132.5 347 45.5
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 6.8e-28 129.0 361 44.6
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 8.9e-28 128.6 363 44.1
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 1.2e-27 128.3 346 46.0
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 2.0e-27 127.5 359 44.0
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 1.7e-26 124.4 361 42.4
THA.LOC104808079 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 1.7e-26 124.4 367 50.4
CARHR071950 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.9e-26 123.6 356 51.7
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 4.9e-26 122.9 346 39.3
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 8.3e-26 122.1 345 38.8
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 8.3e-26 122.1 345 38.8
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 8.3e-26 122.1 360 43.1
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 1.1e-25 121.7 349 34.4
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 1.4e-25 121.3 348 43.1
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 1.4e-25 121.3 351 35.6
Oeu006133.1 Olea europaea HOM05D004052 ORTHO05D004694 1.4e-25 121.3 369 35.0
SGA_v2.0_scaffold73G24348 Striga asiatica HOM05D004052 ORTHO05D004694 4.1e-25 119.8 379 48.3
BcaB03g13016 Brassica carinata HOM05D004052 ORTHO05D004694 9.2e-25 118.6 342 47.7
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 9.2e-25 118.6 346 39.9
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 1.6e-24 117.9 348 41.1
BcaC07g38832 Brassica carinata HOM05D004052 ORTHO05D004694 1.0e-23 115.2 357 48.5
BcaB07g34049 Brassica carinata HOM05D004052 ORTHO05D004694 3.9e-23 113.2 365 51.2
BolC8t49398H Brassica oleracea HOM05D004052 ORTHO05D004694 1.1e-22 111.7 339 49.0
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 1.1e-22 111.7 347 33.1
C08p17720 Brassica napus HOM05D004052 ORTHO05D004694 4.3e-22 109.8 337 48.7
SGA_v2.0_scaffold4G02131 Striga asiatica HOM05D004052 ORTHO05D004694 4.3e-22 109.8 308 42.2
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 1.2e-21 108.2 349 34.7
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 1.6e-21 107.8 349 43.0
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.0e-20 105.1 88 67.0
unitig_747.g21598 Utricularia gibba HOM05D004052 ORTHO05D004694 1.5e-19 101.3 344 39.0
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 2.2e-18 97.4 214 48.6
A08p31110 Brassica napus HOM05D004052 ORTHO05D004694 8.3e-18 95.5 336 53.0
BraA08t35037Z Brassica rapa HOM05D004052 ORTHO05D004694 8.3e-18 95.5 336 53.0
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 8.3e-18 95.5 367 34.6
Medtr8g008740 Medicago truncatula HOM05D000280 ORTHO05D000632 5.4e-17 92.8 90 57.8
CDE10G0568 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 7.8e-16 89.0 192 43.2
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 1.7e-15 87.8 205 39.0
Zm00001eb152670 Zea mays HOM05D004052 ORTHO05D004694 3.3e-14 83.6 406 36.7
MD14G1047200 Malus domestica HOM05D004052 ORTHO05D004694 3.7e-10 70.1 88 51.1
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 3.7e-10 70.1 390 28.7
Zm00001eb370640 Zea mays HOM05D004052 ORTHO05D004694 6.4e-10 69.3 443 32.7
ATR0730G143 Amborella trichopoda HOM05D004052 ORTHO05D004694 1.9e-09 67.8 104 47.1
Os01g0757600 Oryza sativa ssp. japonica HOM05D004052 ORTHO05D004694 4.1e-09 66.6 201 33.8
PGSC0003DMG400007194 Solanum tuberosum HOM05D004052 ORTHO05D004694 1.2e-08 65.1 79 53.2
Lalb_Chr19g0137441 Lupinus albus HOM05D000666 ORTHO05D001727 2.1e-08 64.3 126 37.3
Lalb_Chr03g0027061 Lupinus albus HOM05D000666 ORTHO05D001727 2.3e-07 60.8 119 37.0
Nn2g10660 Nelumbo nucifera HOM05D000666 ORTHO05D001727 2.3e-07 60.8 118 39.8
CDE09G1432 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 3.0e-07 60.5 98 43.9
Peaxi162Scf01604g00017 Petunia axillaris HOM05D000666 ORTHO05D001727 3.9e-07 60.1 115 39.1
TWI77G0173 Tripterygium wilfordii HOM05D000666 ORTHO05D001727 8.6e-07 58.9 127 35.4
Actinidia19713 Actinidia chinensis HOM05D000666 ORTHO05D001727 1.1e-06 58.5 140 33.6
FAN14G2440 Fragaria x ananassa HOM05D000666 ORTHO05D001727 1.9e-06 57.8 99 39.4
RcHm_v2.0_Chr3g0468851 Rosa chinensis HOM05D000666 ORTHO05D001727 1.9e-06 57.8 99 39.4
PGR142G3858 Punica granatum HOM05D000666 ORTHO05D001727 2.5e-06 57.4 128 35.9
Sopen10g035400 Solanum pennellii HOM05D000666 ORTHO05D001727 2.5e-06 57.4 105 41.9
MBI14_g17614_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001727 3.3e-06 57.0 190 32.1
Solyc10g086030.2 Solanum lycopersicum HOM05D000666 ORTHO05D001727 3.3e-06 57.0 105 41.9
Thecc.09G261500 Theobroma cacao HOM05D000666 ORTHO05D001727 3.3e-06 57.0 114 38.6
Glyma.11G151915 Glycine max HOM05D000666 ORTHO05D001727 5.6e-06 56.2 190 28.9
Lalb_Chr02g0156341 Lupinus albus HOM05D000666 ORTHO05D001727 5.6e-06 56.2 116 38.8
CiPaw.09G179900 Carya illinoinensis HOM05D000666 ORTHO05D001727 7.3e-06 55.8 92 40.2
FAN09G4646 Fragaria x ananassa HOM05D000666 ORTHO05D001727 9.5e-06 55.5 109 35.8
Manes.11G140400 Manihot esculenta HOM05D000666 ORTHO05D001727 9.5e-06 55.5 146 32.9
Nitab4.5_0003895g0040 Nicotiana tabacum HOM05D000666 ORTHO05D001727 9.5e-06 55.5 114 37.7
Psat7g222360 Pisum sativum HOM05D000666 ORTHO05D001727 9.5e-06 55.5 189 28.6


User provided reference genes

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