Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g020180 Solanum pennellii HOM05D001966 ORTHO05D010127 9.4e-104 380.2 189 100.0
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 2.3e-33 146.4 151 56.3
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 4.3e-32 142.1 176 47.7
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 4.8e-31 138.7 171 49.7
Gohir.A01G139755 Gossypium hirsutum HOM05D001966 ORTHO05D010127 6.2e-31 138.3 74 86.5
Gohir.1Z050082 Gossypium hirsutum HOM05D001966 ORTHO05D010127 1.1e-30 137.5 74 86.5
Gohir.A04G039225 Gossypium hirsutum HOM05D001966 ORTHO05D010127 1.1e-30 137.5 74 86.5
Gohir.1Z049792 Gossypium hirsutum HOM05D001966 ORTHO05D010127 3.4e-29 132.5 68 89.7
Nitab4.5_0003644g0040 Nicotiana tabacum HOM05D001966 ORTHO05D010127 3.4e-29 132.5 72 81.9
Gohir.A06G123204 Gossypium hirsutum HOM05D001966 ORTHO05D010127 4.9e-28 128.6 74 81.1
FAN13G1592 Fragaria x ananassa HOM05D001966 ORTHO05D010127 9.3e-27 124.4 72 79.2
arahy.Tifrunner.gnm1.ann1.UVG9XA Arachis hypogaea HOM05D001966 ORTHO05D010127 2.1e-26 123.2 72 80.6
arahy.Tifrunner.gnm1.ann1.CV40CV Arachis hypogaea HOM05D001966 ORTHO05D010127 2.7e-26 122.9 72 79.2
Gohir.D01G134240 Gossypium hirsutum HOM05D001966 ORTHO05D010127 1.8e-25 120.2 72 77.8
Peaxi162Scf01071g00036 Petunia axillaris HOM05D001966 ORTHO05D010127 2.3e-25 119.8 75 78.7
Gorai.002G166100 Gossypium raimondii HOM05D001966 ORTHO05D010127 5.1e-25 118.6 72 77.8
arahy.Tifrunner.gnm1.ann1.WY6BZE Arachis hypogaea HOM05D004182 ORTHO05D010127 1.8e-22 110.2 72 76.4
arahy.Tifrunner.gnm1.ann1.SGU002 Arachis hypogaea HOM05D000213 ORTHO05D000426 5.3e-22 108.6 79 69.6
Gorai.007G150800 Gossypium raimondii HOM05D001966 ORTHO05D010127 6.9e-22 108.2 63 81.0
Gorai.011G180000 Gossypium raimondii HOM05D001966 ORTHO05D010127 2.6e-21 106.3 74 71.6
arahy.Tifrunner.gnm1.ann1.0KS2YP Arachis hypogaea HOM05D004182 ORTHO05D007321 7.6e-21 104.8 130 51.5
Gohir.D11G306003 Gossypium hirsutum HOM05D001966 ORTHO05D010127 7.6e-21 104.8 63 81.0
Gohir.D11G140550 Gossypium hirsutum HOM05D001966 ORTHO05D010127 9.9e-21 104.4 63 77.8
Gorai.007G326200 Gossypium raimondii HOM05D001966 ORTHO05D010127 1.3e-20 104.0 63 79.4
arahy.Tifrunner.gnm1.ann1.9XT8BN Arachis hypogaea HOM05D001966 ORTHO05D010127 2.5e-19 99.8 51 92.2
arahy.Tifrunner.gnm1.ann1.H5WC3R Arachis hypogaea HOM05D001966 ORTHO05D011119 2.5e-19 99.8 51 92.2
Glyma.20G027700 Glycine max HOM05D001966 ORTHO05D010127 4.2e-19 99.0 71 64.8
arahy.Tifrunner.gnm1.ann1.71HDHZ Arachis hypogaea HOM05D001966 ORTHO05D010127 1.2e-18 97.4 64 71.9
Phvul.008G246600 Phaseolus vulgaris HOM05D001966 ORTHO05D010127 1.6e-18 97.1 70 70.0
Nn029s41582 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.0e-17 94.4 44 95.5
Nn031s41607 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.0e-17 94.4 44 95.5
Nn064s42219 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.0e-17 94.4 44 95.5
Nn212s45204 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.0e-17 94.4 44 95.5
Nn264s45948 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.0e-17 94.4 44 95.5
Nn304s46230 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.0e-17 94.4 44 95.5
Nn349s46476 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.0e-17 94.4 44 95.5
Nn403s46569 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.0e-17 94.4 44 95.5
Nn442s46689 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.0e-17 94.4 44 95.5
Nn4g25380 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.0e-17 94.4 44 95.5
Oeu012760.1 Olea europaea HOM05D001966 ORTHO05D010127 1.0e-17 94.4 52 84.6
Nitab4.5_0006306g0030 Nicotiana tabacum HOM05D001966 ORTHO05D010127 5.1e-17 92.0 45 91.1
Peaxi162Scf00263g00168 Petunia axillaris HOM05D001966 ORTHO05D010127 8.7e-17 91.3 155 42.6
Nn6g32819 Nelumbo nucifera HOM05D001966 ORTHO05D010127 1.1e-16 90.9 46 87.0
EL10Ac7g17373 Beta vulgaris HOM05D004182 ORTHO05D010127 1.5e-16 90.5 44 93.2
BolSC35t60712H Brassica oleracea HOM05D004182 ORTHO05D007321 1.9e-16 90.1 155 44.5
PGSC0003DMG400027965 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.5e-16 89.7 59 81.4
PGSC0003DMG400041917 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.5e-16 89.7 59 81.4
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 3.3e-16 89.4 150 44.7
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-16 89.4 150 44.7
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-16 89.4 150 44.7
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-16 89.4 150 44.7
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-16 89.4 150 44.7
BraSC103t45421Z Brassica rapa HOM05D004182 ORTHO05D007321 3.3e-16 89.4 150 44.7
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 3.3e-16 89.4 150 44.7
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 3.3e-16 89.4 150 44.7
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 3.3e-16 89.4 150 44.7
Sopen09g027020 Solanum pennellii HOM05D001966 ORTHO05D011119 3.3e-16 89.4 170 41.8
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 4.3e-16 89.0 137 46.0
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 5.6e-16 88.6 158 43.0
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 7.4e-16 88.2 155 43.2
Cpa.g.sc302.2 Carica papaya HOM05D001966 ORTHO05D010127 7.4e-16 88.2 44 93.2
Gohir.1Z050966 Gossypium hirsutum HOM05D001966 ORTHO05D010127 7.4e-16 88.2 44 93.2
Lsat_1_v5_gn_6_14541 Lactuca sativa HOM05D001966 ORTHO05D010127 7.4e-16 88.2 44 90.9
TPR.G18363 Trifolium pratense HOM05D000107 ORTHO05D000062 7.4e-16 88.2 44 90.9
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 7.4e-16 88.2 181 37.6
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 1.3e-15 87.4 60 76.7
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.3e-15 87.4 60 76.7
arahy.Tifrunner.gnm1.ann1.U90T8C Arachis hypogaea HOM05D004182 ORTHO05D010127 2.8e-15 86.3 44 90.9
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 4.8e-15 85.5 60 75.0
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.8e-15 85.5 60 75.0
Atru.chr6.228 Acer truncatum HOM05D004182 ORTHO05D004271 6.2e-15 85.1 47 87.2
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 6.2e-15 85.1 60 75.0
Nn1g00555 Nelumbo nucifera HOM05D001966 ORTHO05D010127 8.2e-15 84.7 46 82.6
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 1.8e-14 83.6 60 75.0
Sopen09g015240 Solanum pennellii HOM05D000004 ORTHO05D011466 2.4e-14 83.2 47 87.2
Lsat_1_v5_gn_6_14561 Lactuca sativa HOM05D001966 ORTHO05D010127 3.1e-14 82.8 42 88.1
arahy.Tifrunner.gnm1.ann1.Y35SJI Arachis hypogaea HOM05D004182 ORTHO05D007321 4.0e-14 82.4 48 83.3
A08p09050 Brassica napus HOM05D001966 ORTHO05D010127 4.0e-14 82.4 64 64.1
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 4.0e-14 82.4 150 42.7
Gohir.A05G323708 Gossypium hirsutum HOM05D004182 ORTHO05D007321 5.3e-14 82.0 48 83.3
Nitab4.5_0018109g0010 Nicotiana tabacum HOM05D001966 ORTHO05D010127 2.0e-13 80.1 36 97.2
arahy.Tifrunner.gnm1.ann1.5LAD0A Arachis hypogaea HOM05D004182 ORTHO05D007321 3.4e-13 79.3 70 64.3
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 5.8e-13 78.6 158 41.8
BraSC143t45651Z Brassica rapa HOM05D004182 ORTHO05D007321 5.8e-13 78.6 138 40.6
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.2e-12 76.6 57 70.2
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.2e-12 76.6 57 70.2
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.2e-12 76.6 57 70.2
Sopen02g009080 Solanum pennellii HOM05D004182 ORTHO05D007321 2.9e-12 76.3 39 94.9
SEGI_06057 Sequoiadendron giganteum HOM05D033036 ORTHO05D036140 6.5e-12 75.1 66 60.6
Gorai.007G258700 Gossypium raimondii HOM05D004182 ORTHO05D007321 1.1e-11 74.3 48 75.0
Cpa.g.sc2529.2 Carica papaya HOM05D004182 ORTHO05D010127 1.4e-11 73.9 43 83.7
Glyma.05G084375 Glycine max HOM05D004182 ORTHO05D010127 1.9e-11 73.6 56 64.3
Gohir.A05G327708 Gossypium hirsutum HOM05D001966 ORTHO05D010127 1.9e-11 73.6 34 97.1
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 1.9e-11 73.6 70 61.4
arahy.Tifrunner.gnm1.ann1.P0IFIP Arachis hypogaea HOM05D004182 ORTHO05D007321 4.2e-11 72.4 65 60.0
BraSC58t46465Z Brassica rapa HOM05D004182 ORTHO05D007321 4.2e-11 72.4 125 43.2
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.2e-11 72.4 45 73.3
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 5.5e-11 72.0 170 37.1
BcaC04g20783 Brassica carinata HOM05D004182 ORTHO05D010127 7.1e-11 71.6 43 79.1
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 7.1e-11 71.6 51 74.5
BolSC49t61151H Brassica oleracea HOM05D004182 ORTHO05D007321 7.1e-11 71.6 51 74.5
VMungo0720G0883 Vigna mungo HOM05D004182 ORTHO05D007321 1.2e-10 70.9 48 77.1
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 6.1e-10 68.6 48 68.8
Sopen03g036740 Solanum pennellii HOM05D001966 ORTHO05D010127 3.0e-09 66.2 36 80.6
Gohir.D10G118433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 8.7e-09 64.7 47 66.0
Gohir.A07G125450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.9e-08 63.5 47 68.1
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 2.5e-08 63.2 38 78.9
BraSC59t46543Z Brassica rapa HOM05D004182 ORTHO05D007321 2.5e-08 63.2 40 80.0
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 4.3e-08 62.4 56 62.5
CAN.G1185.4 Capsicum annuum HOM05D000964 ORTHO05D003870 7.4e-08 61.6 87 44.8
Oeu022559.1 Olea europaea HOM05D001966 ORTHO05D011119 9.7e-08 61.2 35 80.0
BcaC04g22013 Brassica carinata HOM05D004182 ORTHO05D010127 8.2e-07 58.2 43 67.4
Oeu008622.1 Olea europaea HOM05D000866 ORTHO05D000673 8.2e-07 58.2 39 69.2
DCAR_007750 Daucus carota HOM05D000444 ORTHO05D000489 1.1e-06 57.8 26 92.3
Migut.D01395 Erythranthe guttata HOM05D004182 ORTHO05D007321 6.9e-06 55.1 24 95.8


User provided reference genes

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