Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 2664.8 1361 100.0
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 2238.4 1359 85.0
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 2145.9 1387 81.0
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 2082.0 1400 78.6
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 0.0e+00 1624.8 841 98.6
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1537.3 1395 59.8
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1518.4 1369 59.5
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1506.1 1396 58.2
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1471.8 1413 57.5
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1464.1 1379 58.7
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1454.9 1382 57.2
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1449.5 1380 57.7
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1438.7 1424 56.2
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1434.5 1372 57.6
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1432.9 1377 57.4
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1423.7 1493 54.7
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1419.1 1373 57.6
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1417.9 1371 56.7
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1415.2 1368 56.4
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1401.0 1372 57.1
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1395.9 1367 56.3
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1387.9 1364 57.2
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1379.0 1364 56.7
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1377.5 1364 56.9
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1375.5 1364 55.7
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1363.2 1513 51.6
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1357.0 1358 55.0
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1351.3 1359 55.0
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1351.3 1463 52.7
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1333.2 1367 54.1
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1327.4 1389 53.6
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1311.6 1363 53.3
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1306.2 1372 53.6
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1306.2 1372 53.6
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1300.8 1362 52.8
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1296.2 1448 50.7
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1291.9 1440 52.2
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1286.2 1403 52.2
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1285.4 1367 52.7
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1279.6 1368 52.9
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1277.7 1363 52.2
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1273.1 1366 52.2
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1267.7 1363 51.8
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1258.8 1363 51.4
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1258.0 1370 51.6
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1254.6 1367 51.6
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1246.1 1365 51.4
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1245.7 1359 51.2
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1245.7 1395 51.8
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1245.3 1369 51.7
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1242.6 1372 51.1
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1242.3 1419 49.7
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1225.3 1379 50.4
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1216.8 1327 51.9
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1215.7 1361 50.0
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1213.7 1427 49.1
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1213.4 1391 50.0
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1207.2 1398 50.6
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1206.8 1390 49.9
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1201.0 1427 48.9
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1199.9 1268 53.5
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1195.6 1427 48.6
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1193.7 1368 49.9
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1193.3 1378 48.8
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1192.2 1365 49.6
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1191.4 1361 49.2
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1185.2 1427 48.7
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1178.3 1367 50.9
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1173.7 1366 49.3
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1173.7 1361 49.7
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1168.3 1365 48.6
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1167.1 1371 49.2
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1160.6 1373 48.7
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1159.1 1377 48.7
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1158.7 1372 47.8
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1145.2 1383 47.7
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1144.8 1393 49.3
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1143.6 1384 47.8
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1139.8 1397 49.3
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1137.9 1384 47.7
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1137.9 1384 47.7
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1137.9 1384 47.7
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1134.0 1360 48.2
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1130.2 1380 47.4
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 0.0e+00 1127.5 1362 49.3
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 0.0e+00 1121.7 1376 47.8
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1119.4 1369 47.0
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1118.2 1089 56.9
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1117.1 1377 47.3
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1082.8 1377 46.3
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.4e-310 1070.1 1367 46.5
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 1.6e-309 1066.6 1385 46.3
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 9.2e-302 1040.8 1120 52.6
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 7.4e-275 951.4 1399 42.0
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 2.4e-270 936.4 1330 44.3
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 6.0e-261 905.2 923 55.5
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 4.8e-242 842.4 529 84.1
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 2.5e-238 830.1 927 51.2
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 1.4e-228 797.7 705 61.6
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.1e-214 751.5 720 57.8
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 1.1e-198 698.4 780 52.7
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 1.4e-193 681.4 657 58.8
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.6e-189 667.9 840 48.3
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 8.3e-186 655.6 933 45.1
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 6.0e-184 649.4 684 51.5
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 2.1e-181 641.0 605 56.5
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 3.1e-172 610.5 470 66.2
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.0e-167 595.5 849 43.2
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 1.3e-165 588.6 1283 34.2
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 7.6e-147 526.2 1363 30.2
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.2e-144 518.8 515 52.0
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.6e-141 508.4 361 72.0
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 1.4e-140 505.4 266 95.9
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 2.5e-134 484.6 1142 32.6
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 3.1e-132 477.6 360 65.6
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 1.7e-130 471.9 380 64.5
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 8.5e-130 469.5 1076 33.6
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 4.7e-128 463.8 1320 28.9
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.8e-114 417.5 418 52.2
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 4.4e-94 350.9 673 34.6
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.1e-92 344.7 439 44.4
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 6.4e-85 320.5 240 67.9
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 7.8e-83 313.5 326 50.3
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.0e-70 272.3 314 47.8
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.2e-69 268.9 351 44.4
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 7.8e-59 233.8 341 40.8
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.8e-55 222.6 231 52.8
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 7.1e-52 210.7 368 39.1
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.6e-43 183.0 293 40.6
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.3e-42 179.9 200 53.5
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.8e-39 169.5 121 69.4
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.6e-35 156.4 89 88.8
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 4.6e-35 154.8 753 24.0
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 9.6e-33 147.1 420 28.3
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 1.1e-28 133.7 285 36.1
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 6.7e-26 124.4 209 39.2
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 5.0e-21 108.2 155 45.2
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.1e-20 107.1 173 40.5
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.6e-19 101.7 460 25.9
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 8.2e-16 90.9 432 24.5
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 1.1e-15 90.5 460 22.4
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.9e-13 82.4 75 48.0
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.0e-10 73.9 86 48.8
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 3.0e-10 72.4 70 52.9
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.4e-07 63.5 121 40.5
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 4.1e-07 62.0 78 42.3
Sabra05G0049200 Salix brachista HOM05D005030 ORTHO05D006490 9.1e-07 60.8 98 42.9


User provided reference genes

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