Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 9.6e-49 196.4 94 100.0
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 3.4e-46 188.0 94 95.7
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 7.8e-43 176.8 95 88.4
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 2.3e-42 175.3 95 88.4
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 4.3e-41 171.0 96 87.5
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 4.0e-39 164.5 94 83.0
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 1.7e-37 159.1 96 80.2
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 1.3e-34 149.4 94 74.5
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 3.0e-34 148.3 94 74.5
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 6.7e-34 147.1 95 73.7
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 1.1e-33 146.4 92 72.8
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 1.9e-33 145.6 95 74.7
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 1.9e-33 145.6 95 71.6
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 2.5e-33 145.2 97 69.1
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 4.3e-33 144.4 95 74.7
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 9.6e-33 143.3 95 70.5
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 9.6e-33 143.3 95 69.5
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 9.6e-33 143.3 99 68.7
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.6e-32 142.5 94 72.3
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 1.6e-32 142.5 93 68.8
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.6e-32 142.5 95 69.5
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 2.1e-32 142.1 94 69.1
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 2.1e-32 142.1 96 69.8
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 2.1e-32 142.1 94 72.3
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 2.8e-32 141.7 95 67.4
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 3.7e-32 141.4 95 68.4
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 6.2e-32 140.6 95 66.3
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 8.1e-32 140.2 96 68.8
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 8.1e-32 140.2 95 67.4
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 8.1e-32 140.2 93 68.8
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 1.1e-31 139.8 92 70.7
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 1.1e-31 139.8 94 67.0
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 1.4e-31 139.4 94 67.0
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 3.1e-31 138.3 96 66.7
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 4.0e-31 137.9 96 65.6
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 4.0e-31 137.9 95 69.5
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 4.0e-31 137.9 94 68.1
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 4.0e-31 137.9 93 66.7
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 5.3e-31 137.5 95 69.5
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 6.9e-31 137.1 97 66.0
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 6.9e-31 137.1 95 69.5
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 1.2e-30 136.3 93 67.7
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 1.5e-30 136.0 95 68.4
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 1.5e-30 136.0 96 67.7
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 2.6e-30 135.2 94 69.1
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 2.6e-30 135.2 94 69.1
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 2.6e-30 135.2 94 69.1
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 2.6e-30 135.2 94 69.1
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 2.6e-30 135.2 94 69.1
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 2.6e-30 135.2 94 69.1
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 2.6e-30 135.2 93 72.0
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 4.5e-30 134.4 94 64.9
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 5.8e-30 134.0 96 67.7
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 7.6e-30 133.7 95 68.4
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 9.9e-30 133.3 95 71.6
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 1.3e-29 132.9 99 64.6
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 1.3e-29 132.9 93 71.0
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 1.7e-29 132.5 97 66.0
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 2.2e-29 132.1 101 61.4
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 2.2e-29 132.1 98 63.3
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 2.9e-29 131.7 95 63.2
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 2.9e-29 131.7 98 63.3
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 3.8e-29 131.3 95 68.4
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 3.8e-29 131.3 90 67.8
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 4.9e-29 131.0 92 65.2
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 6.4e-29 130.6 95 68.4
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 6.4e-29 130.6 98 62.2
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 8.4e-29 130.2 93 61.3
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 8.4e-29 130.2 94 66.0
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 8.4e-29 130.2 93 64.5
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 1.1e-28 129.8 95 68.4
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.5e-28 128.6 95 67.4
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 2.5e-28 128.6 93 61.3
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 3.2e-28 128.3 94 61.7
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 4.2e-28 127.9 97 61.9
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 7.1e-28 127.1 94 61.7
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 7.1e-28 127.1 94 67.0
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 9.3e-28 126.7 95 62.1
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 1.6e-27 125.9 86 69.8
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 1.6e-27 125.9 97 64.9
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 2.7e-27 125.2 92 67.4
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 3.5e-27 124.8 97 58.8
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 4.6e-27 124.4 93 66.7
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 4.6e-27 124.4 92 68.5
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 7.9e-27 123.6 92 68.5
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 1.0e-26 123.2 97 64.9
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 1.0e-26 123.2 97 60.8
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 1.3e-26 122.9 91 64.8
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 3.9e-26 121.3 93 65.6
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 4.8e-24 114.4 100 59.0
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.8e-23 112.5 100 58.0
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 2.4e-23 112.1 106 55.7
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 1.2e-22 109.8 93 57.0
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 6.5e-21 104.0 91 56.0
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 3.2e-20 101.7 102 52.9
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 1.9e-17 92.4 79 62.0
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 1.9e-17 92.4 95 46.3
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 4.3e-17 91.3 93 48.4
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 5.7e-17 90.9 59 69.5
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 7.4e-17 90.5 62 71.0
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 6.3e-16 87.4 95 44.2
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 1.1e-15 86.7 94 46.8
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 1.4e-15 86.3 91 46.2
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 3.1e-15 85.1 92 46.7
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 1.5e-14 82.8 69 55.1
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 2.6e-14 82.0 69 63.8
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 6.5e-13 77.4 94 44.7
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 1.9e-12 75.9 94 41.5
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 2.5e-12 75.5 55 63.6
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 2.2e-08 62.4 59 54.2
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 1.1e-07 60.1 94 39.4


User provided reference genes

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