Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1566.2 846 100.0
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1563.5 846 99.4
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1545.8 846 98.7
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1396.7 847 90.1
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1359.0 848 87.4
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1345.1 852 85.0
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1231.5 859 78.3
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1227.6 833 77.8
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1219.9 804 81.2
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1205.3 890 73.7
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1204.1 847 74.9
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1178.3 849 74.9
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1178.3 846 75.4
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1168.7 836 73.6
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1162.1 855 72.9
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1161.7 849 73.0
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 0.0e+00 1161.4 908 70.7
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 0.0e+00 1159.8 849 72.0
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1158.3 844 73.0
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1152.5 860 72.4
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1151.7 833 73.0
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1151.3 845 72.8
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1150.6 860 72.2
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1150.2 857 72.0
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1150.2 846 72.7
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1147.5 835 71.9
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1146.3 845 73.3
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1145.6 835 71.7
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1145.6 835 72.1
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1144.8 857 71.1
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1144.0 849 72.0
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1143.6 789 76.7
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1143.3 836 72.2
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1141.7 845 74.6
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1140.9 845 74.4
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1140.9 845 71.7
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1140.2 835 71.5
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1139.4 851 72.7
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1138.6 846 72.5
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1138.3 835 71.9
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1137.9 844 71.6
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1137.5 835 71.1
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1136.3 850 72.2
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1136.3 846 72.5
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 0.0e+00 1135.9 833 73.7
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1135.9 838 72.3
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1135.6 845 71.2
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1134.8 835 71.0
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1131.7 847 73.8
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1125.2 839 72.0
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1124.8 846 73.2
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1121.3 847 72.7
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1120.1 842 70.5
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1119.4 826 70.9
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1117.1 847 72.8
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1116.7 792 73.2
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1112.8 848 70.0
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1112.1 826 71.4
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1111.7 847 72.6
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1110.5 842 70.3
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1107.8 847 72.1
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 850 72.0
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 855 70.4
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 842 69.2
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1097.0 842 69.1
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1091.6 846 69.4
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 0.0e+00 1091.3 842 71.0
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1088.2 845 70.5
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1085.9 833 69.3
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1078.2 842 70.8
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1077.8 836 69.4
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 5.2e-311 1070.8 846 69.0
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 8.7e-311 1070.1 830 69.2
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.5e-310 1069.3 829 68.4
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 4.4e-310 1067.8 842 68.2
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 5.7e-310 1067.4 853 69.2
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 1.3e-309 1066.2 828 69.1
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 1.3e-309 1066.2 955 62.6
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 1.7e-309 1065.8 831 68.2
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 2.2e-309 1065.4 827 69.4
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 1.1e-308 1063.1 831 68.7
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 2.4e-308 1062.0 828 68.7
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 5.4e-308 1060.8 831 68.6
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 9.1e-308 1060.1 883 67.4
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 3.5e-307 1058.1 831 68.5
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 5.9e-307 1057.4 572 96.0
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 1.7e-306 1055.8 827 68.7
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 4.7e-304 1047.7 856 66.8
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 4.0e-303 1044.6 828 69.9
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 6.8e-303 1043.9 820 67.9
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 3.4e-302 1041.6 820 67.9
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 7.5e-302 1040.4 820 67.8
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 4.0e-295 1018.1 835 63.8
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 2.9e-293 1011.9 835 66.3
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 2.9e-293 1011.9 731 71.5
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 7.0e-292 1007.3 646 79.4
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.7e-290 1002.7 646 79.1
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 3.3e-289 998.4 753 72.5
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.3e-285 986.5 832 62.7
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 4.9e-285 984.6 807 66.3
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 8.3e-285 983.8 942 61.9
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 3.5e-283 978.4 669 73.8
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 7.3e-281 970.7 669 72.6
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 1.4e-276 956.4 635 77.5
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 4.6e-275 951.4 837 61.1
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 4.7e-272 941.4 850 56.9
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 4.7e-272 941.4 812 64.3
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 4.3e-265 918.3 621 73.9
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 2.7e-259 899.0 845 54.1
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 2.3e-258 896.0 844 54.0
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 1.6e-243 846.7 789 54.5
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.4e-236 823.5 792 53.3
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.1e-232 809.7 863 57.5
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 4.1e-231 805.4 844 58.6
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 9.1e-199 698.0 427 81.7
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 3.1e-170 603.2 480 67.7
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.9e-156 557.4 438 68.5
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 2.6e-129 467.2 319 75.2
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 7.1e-127 459.1 778 36.0
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 8.7e-125 452.2 306 72.5
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.1e-124 451.8 384 63.3
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 2.4e-122 444.1 785 35.3
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.2e-119 433.7 262 82.8
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 3.1e-106 390.6 387 63.6
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 2.0e-100 371.3 858 30.7
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.9e-95 354.8 278 69.8
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.2e-79 300.4 417 49.6
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 3.5e-57 227.6 224 59.4
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 3.5e-57 227.6 140 80.7
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 1.1e-47 196.1 125 77.6
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 5.2e-45 187.2 131 68.7
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.0e-40 171.4 142 66.2
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 1.2e-36 159.5 121 72.7
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.4e-34 152.5 147 55.1
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.9e-34 152.1 147 55.1
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.9e-31 142.1 160 52.5
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 9.6e-15 86.7 70 65.7
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 2.6e-12 78.6 77 57.1


User provided reference genes

Program Settings