Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g032440 Solanum pennellii HOM05D018538 ORTHO05D000653 4.4e-118 427.9 213 100.0
Sopen09g032450 Solanum pennellii HOM05D018538 ORTHO05D000653 3.6e-51 205.7 116 89.7
Solyc09g089520.4 Solanum lycopersicum HOM05D018538 ORTHO05D036931 1.1e-47 194.1 116 86.2
Sopen09g032460 Solanum pennellii HOM05D018538 ORTHO05D000653 2.1e-43 179.9 111 81.1
Solyc09g089500.3 Solanum lycopersicum HOM05D018538 ORTHO05D000653 4.7e-43 178.7 99 85.9
Nitab4.5_0000525g0290 Nicotiana tabacum HOM05D018538 ORTHO05D036931 1.8e-26 123.6 128 56.2
Peaxi162Scf00714g00217 Petunia axillaris HOM05D001004 ORTHO05D000653 7.3e-20 101.7 200 37.0
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 3.7e-16 89.4 161 37.9
COL.COLO4_05579 Corchorus olitorius HOM05D001004 ORTHO05D000653 4.1e-15 85.9 172 34.9
Solyc09g084490.4 Solanum lycopersicum HOM05D001004 ORTHO05D000653 7.8e-14 81.6 108 43.5
Solyc08g080630.4 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.0e-13 81.3 104 46.2
Solyc09g084460.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.0e-13 81.3 109 42.2
Sopen08g028940 Solanum pennellii HOM05D001004 ORTHO05D000653 1.3e-13 80.9 104 46.2
Sopen09g032410 Solanum pennellii HOM05D001004 ORTHO05D000653 1.3e-13 80.9 98 43.9
Nitab4.5_0003154g0030 Nicotiana tabacum HOM05D001004 ORTHO05D000653 3.0e-13 79.7 113 46.9
Solyc09g084470.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 8.6e-13 78.2 98 42.9
Carub.0008s0504 Capsella rubella HOM05D001004 ORTHO05D000653 1.9e-12 77.0 164 35.4
Solyc09g084480.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.9e-12 77.0 96 43.8
PGSC0003DMG400003056 Solanum tuberosum HOM05D001004 ORTHO05D000653 3.3e-12 76.3 118 44.9
PGSC0003DMG400012089 Solanum tuberosum HOM05D001004 ORTHO05D000653 4.3e-12 75.9 86 45.3
CAN.G1098.2 Capsicum annuum HOM05D001004 ORTHO05D000653 5.6e-12 75.5 111 45.0
AUR62010425 Chenopodium quinoa HOM05D001004 ORTHO05D000653 1.2e-11 74.3 165 30.3
Peaxi162Scf00714g00213 Petunia axillaris HOM05D001004 ORTHO05D000653 1.6e-11 73.9 113 42.5
Solyc09g084450.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.6e-11 73.9 98 42.9
Sopen09g032420 Solanum pennellii HOM05D001004 ORTHO05D000653 1.1e-10 71.2 86 41.9
CAN.G1871.1 Capsicum annuum HOM05D001004 ORTHO05D000653 1.4e-10 70.9 109 42.2
ClCG05G004540 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.4e-10 70.9 165 34.5
SalBow6G7260 Salvia bowleyana HOM05D001004 ORTHO05D000653 2.3e-10 70.1 70 51.4
CAN.G859.1 Capsicum annuum HOM05D001004 ORTHO05D000653 6.8e-10 68.6 122 42.6
Sopen09g032430 Solanum pennellii HOM05D001004 ORTHO05D000653 8.9e-10 68.2 84 47.6
Sopen09g032370 Solanum pennellii HOM05D001004 ORTHO05D000653 2.0e-09 67.0 90 43.3
Solyc09g089530.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 2.6e-09 66.6 103 36.9
SalBow6G4720 Salvia bowleyana HOM05D001004 ORTHO05D000653 4.4e-09 65.9 71 50.7
Nitab4.5_0000754g0170 Nicotiana tabacum HOM05D001004 ORTHO05D000653 5.8e-09 65.5 109 41.3
FAN17G1119 Fragaria x ananassa HOM05D001004 ORTHO05D000653 7.5e-09 65.1 166 31.3
FAN12G4135 Fragaria x ananassa HOM05D001004 ORTHO05D000653 9.8e-09 64.7 161 32.3
Sp2g08390 Schrenkiella parvula HOM05D001004 ORTHO05D000653 9.8e-09 64.7 72 47.2
Carub.0008s0506 Capsella rubella HOM05D001004 ORTHO05D000653 1.3e-08 64.3 72 45.8
Sopen09g032390 Solanum pennellii HOM05D001004 ORTHO05D000653 2.2e-08 63.5 85 40.0
EL10Ac8g18696 Beta vulgaris HOM05D001004 ORTHO05D000653 3.7e-08 62.8 70 47.1
Manes.05G086331 Manihot esculenta HOM05D001004 ORTHO05D000653 3.7e-08 62.8 71 49.3
Carub.0008s0505 Capsella rubella HOM05D001004 ORTHO05D000653 6.4e-08 62.0 72 44.4
Manes.05G086373 Manihot esculenta HOM05D001004 ORTHO05D000653 6.4e-08 62.0 71 50.7
PSO384G3535 Papaver somniferum HOM05D001004 ORTHO05D000653 6.4e-08 62.0 70 48.6
Thhalv10003342m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 8.3e-08 61.6 73 46.6
CARHR180000 Cardamine hirsuta HOM05D001004 ORTHO05D000653 1.1e-07 61.2 72 47.2
HanXRQChr01g0007291 Helianthus annuus HOM05D001004 ORTHO05D000653 1.1e-07 61.2 69 46.4
Solyc09g083435.1 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.1e-07 61.2 66 43.9
Thhalv10003305m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 1.4e-07 60.8 72 45.8
HanXRQChr01g0007351 Helianthus annuus HOM05D001004 ORTHO05D000653 1.9e-07 60.5 69 46.4
HanXRQChr13g0424371 Helianthus annuus HOM05D001004 ORTHO05D000653 1.9e-07 60.5 71 47.9
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.4e-07 60.1 67 46.3
GSVIVG01018137001 Vitis vinifera HOM05D001004 ORTHO05D000653 2.4e-07 60.1 70 42.9
Actinidia05828 Actinidia chinensis HOM05D008628 ORTHO05D010443 3.2e-07 59.7 197 31.5
Gohir.A05G281700 Gossypium hirsutum HOM05D001004 ORTHO05D000653 3.2e-07 59.7 65 44.6
Gorai.009G297300 Gossypium raimondii HOM05D001004 ORTHO05D000653 3.2e-07 59.7 65 44.6
PGSC0003DMG400026953 Solanum tuberosum HOM05D009680 ORTHO05D010443 3.2e-07 59.7 179 27.4
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 4.1e-07 59.3 70 47.1
Gohir.D05G283088 Gossypium hirsutum HOM05D001004 ORTHO05D000653 4.1e-07 59.3 65 44.6
Gorai.009G297200 Gossypium raimondii HOM05D001004 ORTHO05D000653 4.1e-07 59.3 65 44.6
Gorai.009G297400 Gossypium raimondii HOM05D001004 ORTHO05D000653 4.1e-07 59.3 65 44.6
PSO566G0151 Papaver somniferum HOM05D001004 ORTHO05D000653 4.1e-07 59.3 70 44.3
AT5G43580 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 5.4e-07 58.9 72 44.4
AUR62011909 Chenopodium quinoa HOM05D001004 ORTHO05D000653 5.4e-07 58.9 70 44.3
Gohir.A05G281850 Gossypium hirsutum HOM05D001004 ORTHO05D000653 5.4e-07 58.9 65 44.6
Gohir.A05G281800 Gossypium hirsutum HOM05D001004 ORTHO05D000653 7.1e-07 58.5 65 44.6
SalBow6G2951 Salvia bowleyana HOM05D001004 ORTHO05D000653 7.1e-07 58.5 69 47.8
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 7.1e-07 58.5 68 47.1
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 7.1e-07 58.5 68 44.1
HanXRQChr01g0007271 Helianthus annuus HOM05D001004 ORTHO05D000653 9.2e-07 58.2 68 50.0
Medtr1g075340 Medicago truncatula HOM05D001004 ORTHO05D000653 9.2e-07 58.2 68 47.1
Thecc.05G233200 Theobroma cacao HOM05D001004 ORTHO05D000653 9.2e-07 58.2 67 47.8
Duzib114G0743 Durio zibethinus HOM05D001004 ORTHO05D000653 1.2e-06 57.8 68 47.1
HanXRQChr01g0005401 Helianthus annuus HOM05D001004 ORTHO05D000653 1.2e-06 57.8 66 48.5
HanXRQChr13g0424341 Helianthus annuus HOM05D001004 ORTHO05D000653 1.2e-06 57.8 64 46.9
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 1.2e-06 57.8 68 44.1
Atru.chr4.2206 Acer truncatum HOM05D001004 ORTHO05D000653 1.6e-06 57.4 69 47.8
Nitab4.5_0001418g0040 Nicotiana tabacum HOM05D018538 ORTHO05D036931 1.6e-06 57.4 50 64.0
GSVIVG01018139001 Vitis vinifera HOM05D001004 ORTHO05D000653 1.6e-06 57.4 70 41.4
Phvul.007G125500 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 2.1e-06 57.0 68 44.1
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 2.1e-06 57.0 68 45.6
CsaV3_5G013330 Cucumis sativus L. HOM05D001004 ORTHO05D000653 2.7e-06 56.6 67 43.3
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 2.7e-06 56.6 68 45.6
ClCG07G000740 Citrullus lanatus HOM05D001004 ORTHO05D000653 3.5e-06 56.2 67 43.3
HanXRQChr01g0014571 Helianthus annuus HOM05D001004 ORTHO05D000653 3.5e-06 56.2 64 46.9
Hma1.2p1_0310F.1_g120940 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 3.5e-06 56.2 70 44.3
Manes.05G086408 Manihot esculenta HOM05D001004 ORTHO05D000653 3.5e-06 56.2 72 44.4
Sopen10g035470 Solanum pennellii HOM05D001004 ORTHO05D000653 3.5e-06 56.2 73 42.5
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 3.5e-06 56.2 68 45.6
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 3.5e-06 56.2 68 45.6
EL10Ac5g10439 Beta vulgaris HOM05D001004 ORTHO05D000653 4.6e-06 55.8 70 41.4
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 4.6e-06 55.8 70 40.0
CsaV3_3G012540 Cucumis sativus L. HOM05D001004 ORTHO05D000653 4.6e-06 55.8 70 44.3
Migut.A00979 Erythranthe guttata HOM05D001004 ORTHO05D000653 4.6e-06 55.8 70 44.3
Eucgr.I00166 Eucalyptus grandis HOM05D001004 ORTHO05D000653 4.6e-06 55.8 69 46.4
Eucgr.I00167 Eucalyptus grandis HOM05D001004 ORTHO05D000653 4.6e-06 55.8 69 46.4
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 4.6e-06 55.8 70 44.3
QL06p015886 Quercus lobata HOM05D001004 ORTHO05D000653 4.6e-06 55.8 69 42.0
A04p14760 Brassica napus HOM05D001004 ORTHO05D000653 6.0e-06 55.5 72 45.8
Thhalv10017502m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 6.0e-06 55.5 70 45.7
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 6.0e-06 55.5 70 47.1
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 6.0e-06 55.5 70 47.1
HanXRQChr01g0005421 Helianthus annuus HOM05D001004 ORTHO05D000653 6.0e-06 55.5 68 47.1
HanXRQChr01g0005431 Helianthus annuus HOM05D001004 ORTHO05D000653 6.0e-06 55.5 68 47.1
Potri.010G075600 Populus trichocarpa HOM05D001004 ORTHO05D000653 6.0e-06 55.5 71 40.8
Sabra06G0163400 Salix brachista HOM05D001004 ORTHO05D000653 6.0e-06 55.5 70 45.7
SalBow6G2779 Salvia bowleyana HOM05D001004 ORTHO05D000653 6.0e-06 55.5 70 47.1
SalBow6G3365 Salvia bowleyana HOM05D001004 ORTHO05D000653 6.0e-06 55.5 70 47.1
Gohir.A11G128500 Gossypium hirsutum HOM05D001004 ORTHO05D000653 7.8e-06 55.1 67 44.8
Hma1.2p1_0310F.1_g120870 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 7.8e-06 55.1 71 49.3
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 7.8e-06 55.1 67 47.8
Solyc10g086100.2 Solanum lycopersicum HOM05D001004 ORTHO05D000653 7.8e-06 55.1 73 42.5


User provided reference genes

Program Settings