Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 1.3e-188 662.9 340 100.0
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.8e-185 652.5 340 98.2
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 3.5e-173 611.7 340 91.8
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 1.7e-132 476.5 338 76.3
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 9.2e-126 454.1 337 71.8
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.8e-122 442.6 337 70.6
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 1.4e-121 440.3 338 70.1
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.5e-96 357.1 337 59.9
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 7.9e-93 344.7 344 57.0
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 1.3e-92 344.0 342 56.7
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 4.0e-89 332.4 342 54.7
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 1.4e-86 323.9 336 54.8
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 4.2e-86 322.4 337 56.1
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.3e-84 317.4 348 53.2
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 5.7e-83 312.0 341 55.7
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 7.4e-83 311.6 339 54.9
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 2.0e-80 303.5 355 53.2
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 5.5e-78 295.4 343 53.6
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 7.1e-78 295.0 347 51.6
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 1.6e-74 283.9 341 50.1
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 2.6e-72 276.6 266 60.9
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 2.5e-70 270.0 325 48.6
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.6e-69 267.3 326 48.8
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 8.8e-68 261.5 323 49.8
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 3.3e-67 259.6 429 42.0
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 5.7e-67 258.8 337 46.6
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 1.7e-66 257.3 224 59.8
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 2.2e-66 256.9 338 48.2
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 1.1e-65 254.6 345 46.7
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 2.4e-65 253.4 331 47.1
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 2.6e-64 250.0 341 46.3
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 5.9e-64 248.8 349 45.3
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.7e-63 247.3 345 46.1
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 2.2e-63 246.9 357 45.7
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 5.0e-63 245.7 271 52.4
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 1.1e-62 244.6 345 45.5
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 1.9e-62 243.8 310 50.0
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 4.2e-62 242.7 345 45.5
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.2e-61 241.1 333 46.5
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 1.6e-61 240.7 269 51.7
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.7e-61 240.0 335 46.3
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 4.7e-61 239.2 331 46.2
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 6.1e-61 238.8 333 46.2
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.4e-60 237.7 347 44.4
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 5.1e-60 235.7 308 48.4
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 5.1e-60 235.7 272 51.1
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 4.8e-58 229.2 306 48.0
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 3.1e-57 226.5 304 48.4
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 5.3e-57 225.7 315 47.0
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 2.0e-56 223.8 300 47.0
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 2.6e-56 223.4 311 46.6
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 4.5e-56 222.6 313 45.4
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 7.7e-56 221.9 244 50.4
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 2.2e-55 220.3 313 45.0
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 3.8e-55 219.5 317 45.1
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 6.5e-55 218.8 337 45.7
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 8.5e-55 218.4 331 43.5
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.6e-53 214.2 274 46.0
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 2.1e-53 213.8 250 48.4
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 8.0e-53 211.8 344 43.6
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.8e-52 210.7 306 45.1
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 2.3e-52 210.3 363 42.4
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 1.5e-51 207.6 228 53.1
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 2.0e-51 207.2 324 44.4
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.3e-50 204.5 306 44.8
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 1.7e-50 204.1 350 43.7
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 6.3e-50 202.2 317 41.6
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 9.1e-49 198.4 354 41.5
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 3.5e-48 196.4 338 40.8
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.0e-47 194.9 307 41.4
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 2.2e-47 193.7 350 40.9
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 2.9e-47 193.4 344 43.3
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 2.9e-47 193.4 340 42.4
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 3.8e-47 193.0 340 42.9
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.1e-46 191.4 317 42.3
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 1.1e-46 191.4 322 40.4
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 5.5e-46 189.1 320 42.2
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 8.0e-45 185.3 306 41.2
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 1.0e-44 184.9 310 41.9
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 1.0e-44 184.9 326 40.2
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 1.8e-44 184.1 357 40.9
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 3.0e-44 183.3 340 42.1
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 6.8e-44 182.2 333 41.4
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 1.2e-43 181.4 351 39.6
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 2.0e-43 180.6 341 41.1
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 5.7e-43 179.1 308 39.9
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 2.2e-42 177.2 316 38.3
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 4.8e-42 176.0 336 39.9
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 8.3e-42 175.3 309 41.1
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 1.1e-41 174.9 331 38.1
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.4e-41 174.5 273 42.9
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 1.8e-41 174.1 341 39.9
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 2.4e-41 173.7 280 45.0
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 4.1e-41 172.9 334 36.8
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 4.1e-41 172.9 316 38.9
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 9.1e-41 171.8 312 41.3
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 9.1e-41 171.8 270 44.8
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 1.6e-40 171.0 209 48.8
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 2.0e-40 170.6 298 40.6
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 4.5e-40 169.5 337 39.5
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 4.5e-40 169.5 311 41.8
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.3e-39 167.9 337 39.5
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 1.3e-39 167.9 317 37.9
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 1.7e-39 167.5 286 40.9
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 1.7e-39 167.5 343 39.1
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 2.2e-39 167.2 337 39.5
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 3.8e-39 166.4 332 38.3
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 6.5e-39 165.6 348 37.6
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 6.5e-39 165.6 337 37.7
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 8.5e-39 165.2 338 37.6
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 1.1e-38 164.9 307 39.7
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 1.5e-38 164.5 329 38.3
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 5.5e-38 162.5 327 37.3
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 5.5e-38 162.5 333 37.8
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 5.5e-38 162.5 311 39.5
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 7.2e-38 162.2 308 37.7
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.2e-37 161.4 233 44.2
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 2.7e-37 160.2 239 42.3
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 3.6e-37 159.8 342 38.6
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 6.1e-37 159.1 268 38.4
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.8e-36 157.5 361 38.8
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.3e-36 157.1 361 38.8
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 6.8e-36 155.6 290 41.4
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 6.8e-36 155.6 357 38.4
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 6.8e-36 155.6 336 38.1
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 8.8e-36 155.2 294 39.5
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 2.0e-35 154.1 301 35.9
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 9.8e-35 151.8 301 35.5
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 9.8e-35 151.8 273 38.1
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 6.3e-34 149.1 339 37.5
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.8e-33 147.5 305 36.7
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 4.1e-33 146.4 213 44.6
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 5.4e-33 146.0 222 41.0
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 7.0e-33 145.6 331 36.6
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 9.1e-33 145.2 209 41.6
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.3e-31 141.4 295 38.0
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 3.3e-30 136.7 186 44.1
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.5e-27 127.9 341 35.8
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 1.5e-27 127.9 258 38.0
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.0e-27 127.5 286 34.6
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 3.4e-27 126.7 145 53.8
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 4.9e-26 122.9 315 35.9
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 4.6e-24 116.3 267 34.1
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 3.0e-23 113.6 317 33.8
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 2.5e-22 110.5 326 31.0
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.5e-22 110.5 234 38.0
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 4.4e-19 99.8 287 30.7
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 9.8e-19 98.6 240 34.2
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 9.8e-19 98.6 135 48.1
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 3.7e-18 96.7 129 47.3
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 8.3e-18 95.5 176 37.5
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 9.2e-17 92.0 171 38.0
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 9.2e-17 92.0 207 37.7
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 3.3e-14 83.6 164 36.0
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.2e-11 75.1 68 52.9
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 3.4e-11 73.6 99 47.5
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 6.4e-10 69.3 93 40.9
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 6.4e-10 69.3 93 40.9
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 4.1e-09 66.6 119 37.8
Lj6g0004228 Lotus japonicus HOM05D001047 ORTHO05D000768 1.1e-06 58.5 147 32.7
Cpa.g.sc113.51 Carica papaya HOM05D001047 ORTHO05D000768 1.5e-06 58.2 68 51.5
ATR0753G139 Amborella trichopoda HOM05D002346 ORTHO05D002452 2.5e-06 57.4 141 33.3
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 7.3e-06 55.8 149 32.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 7.3e-06 55.8 49 53.1
Os03g0402800 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 9.5e-06 55.5 148 31.8
Pp3c5_11730 Physcomitrium patens HOM05D002346 ORTHO05D002452 9.5e-06 55.5 162 32.1


User provided reference genes

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