Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 0.0e+00 1615.1 812 100.0
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 0.0e+00 1587.8 812 98.4
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 0.0e+00 1330.9 812 82.1
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 0.0e+00 1322.4 824 81.9
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 0.0e+00 1231.9 825 77.8
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.1e-302 1043.1 817 63.4
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 5.9e-296 1020.8 817 62.9
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.3e-295 1019.6 817 62.9
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 3.8e-295 1018.1 814 62.8
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 5.0e-295 1017.7 813 62.9
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.6e-293 1012.7 815 62.9
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 4.7e-293 1011.1 820 62.4
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 8.8e-292 1006.9 820 61.2
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 2.6e-291 1005.4 814 62.3
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 3.3e-291 1005.0 813 61.3
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 7.5e-291 1003.8 815 62.1
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 3.7e-290 1001.5 815 61.5
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 2.4e-289 998.8 816 62.1
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 4.1e-289 998.0 814 61.3
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 1.7e-287 992.6 816 60.5
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 2.2e-287 992.3 814 61.4
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 6.5e-287 990.7 818 61.0
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 6.5e-287 990.7 816 59.8
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 1.1e-286 989.9 817 61.8
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.5e-286 989.6 851 59.8
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 7.2e-286 987.3 814 61.4
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 3.7e-282 974.9 809 59.7
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 3.7e-282 974.9 816 61.3
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 3.1e-281 971.8 878 57.4
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 4.1e-281 971.5 813 60.0
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 7.7e-280 967.2 835 60.8
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 5.5e-278 961.1 818 60.6
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 9.4e-278 960.3 819 59.7
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.6e-277 959.5 819 59.7
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.7e-277 958.7 819 59.7
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 8.0e-277 957.2 813 59.5
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.0e-276 956.8 819 59.0
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 1.2e-275 953.4 814 58.8
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 5.9e-272 941.0 814 59.0
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 1.0e-271 940.3 815 58.5
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 1.3e-271 939.9 788 60.2
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 8.6e-271 937.2 821 59.3
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 8.6e-271 937.2 814 57.9
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 4.7e-269 931.4 816 57.4
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 1.8e-268 929.5 814 58.1
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 1.5e-267 926.4 811 58.6
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.3e-266 923.3 816 58.3
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 2.2e-266 922.5 819 56.4
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 3.7e-266 921.8 819 57.9
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 8.3e-266 920.6 815 58.0
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 1.4e-265 919.8 818 57.8
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 2.4e-265 919.1 814 56.8
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 5.4e-265 917.9 815 58.3
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 2.0e-264 916.0 831 58.1
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 2.7e-264 915.6 815 57.7
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 5.9e-264 914.4 811 56.1
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 2.5e-262 909.1 814 57.7
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 4.7e-261 904.8 811 57.3
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.7e-261 904.8 816 57.7
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.2e-260 901.4 817 57.4
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 8.9e-260 900.6 817 58.8
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.2e-259 900.2 818 55.6
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 3.4e-259 898.7 814 57.1
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 9.8e-259 897.1 817 58.3
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.7e-258 895.2 819 54.9
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 4.9e-258 894.8 819 55.2
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 1.4e-257 893.3 820 55.0
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 3.2e-257 892.1 818 55.3
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 4.6e-256 888.3 817 55.6
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 8.6e-255 884.0 825 55.0
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 1.1e-254 883.6 814 56.1
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 1.9e-254 882.9 817 54.8
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 1.9e-254 882.9 817 54.8
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 2.5e-254 882.5 812 56.8
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 7.3e-254 880.9 817 54.7
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 3.6e-253 878.6 811 55.7
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.4e-252 876.7 879 53.6
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 4.0e-252 875.2 817 56.7
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 1.5e-251 873.2 818 56.8
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 5.8e-251 871.3 843 55.5
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 1.3e-250 870.2 817 55.8
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.2e-250 869.4 827 54.1
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 3.5e-248 862.1 828 54.2
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.9e-246 856.3 814 54.9
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 4.7e-245 851.7 811 54.7
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 9.9e-243 844.0 807 53.9
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 8.4e-242 840.9 815 54.2
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 1.9e-238 829.7 812 52.8
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.2e-235 820.5 811 51.9
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 6.4e-234 814.7 816 51.7
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 4.2e-225 785.4 815 50.9
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 7.1e-225 784.6 812 49.9
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.6e-224 783.5 885 49.4
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 8.7e-223 777.7 814 50.5
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.3e-221 773.9 816 49.4
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 2.8e-221 772.7 626 61.0
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.6e-216 756.9 582 64.4
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 2.1e-216 756.5 817 49.7
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 1.6e-213 746.9 747 53.5
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 2.4e-212 743.0 537 67.2
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 7.7e-179 631.7 830 43.0
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 6.1e-176 622.1 816 43.6
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.8e-173 613.2 816 43.6
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 1.1e-169 601.3 459 66.4
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.0e-166 590.5 847 42.0
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 2.6e-158 563.5 819 42.2
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.3e-146 524.6 843 36.8
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.3e-141 508.1 813 40.0
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 1.1e-137 495.0 834 36.2
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 1.6e-136 491.1 684 41.2
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 2.9e-133 480.3 584 46.1
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.2e-132 476.9 474 53.2
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 9.2e-132 475.3 811 38.2
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 8.6e-130 468.8 854 36.1
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 8.6e-122 442.2 819 37.1
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 3.8e-117 426.8 839 33.6
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.0e-114 418.7 338 60.9
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 2.1e-104 384.4 421 49.6
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.8e-90 338.2 762 31.5
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.0e-77 295.8 366 45.9
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.5e-65 255.4 750 30.3
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 9.4e-60 236.1 278 47.5
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.4e-58 232.3 277 47.3
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 1.5e-57 228.8 277 46.9
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 4.2e-52 210.7 156 67.3
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 3.0e-50 204.5 197 55.3
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.1e-47 196.1 205 52.2
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.8e-47 195.3 191 56.0
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 3.5e-46 191.0 845 24.7
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 5.2e-34 150.6 519 25.8
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 2.9e-32 144.8 104 62.5
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 6.0e-30 137.1 138 47.8
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 1.2e-25 122.9 130 46.2
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 3.9e-21 107.8 97 57.7
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 1.2e-14 86.3 63 63.5
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.6e-14 85.9 63 63.5
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 6.6e-13 80.5 107 44.9
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 6.6e-13 80.5 107 43.9
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.1e-12 79.7 69 49.3
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 4.7e-11 74.3 105 38.1
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 6.4e-08 63.9 49 67.3
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 1.1e-07 63.2 48 62.5
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 2.4e-07 62.0 49 63.3
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 3.2e-07 61.6 96 38.5


User provided reference genes

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