Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 7.5e-280 966.8 555 100.0
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 8.3e-271 936.8 543 93.7
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 2.7e-253 878.6 556 87.4
Nitab4.5_0002330g0130 Nicotiana tabacum HOM05D021138 ORTHO05D009211 2.6e-179 632.9 529 67.3
Nitab4.5_0005017g0030 Nicotiana tabacum HOM05D021138 ORTHO05D009211 1.1e-166 590.9 497 66.6
Peaxi162Scf00069g01735 Petunia axillaris HOM05D021138 ORTHO05D009211 8.1e-157 558.1 500 64.2
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 2.6e-46 191.0 531 33.5
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 5.1e-42 176.8 489 33.7
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 3.5e-35 154.1 510 32.2
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 4.6e-35 153.7 506 31.2
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 4.7e-32 143.7 502 30.1
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 2.2e-29 134.8 553 31.5
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 2.9e-29 134.4 577 30.7
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 2.9e-29 134.4 543 28.7
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 3.8e-29 134.0 501 31.1
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 6.4e-29 133.3 522 28.2
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 4.2e-28 130.6 489 29.2
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 2.1e-27 128.3 472 29.4
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 1.3e-26 125.6 535 29.3
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 2.3e-26 124.8 483 30.6
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 2.5e-25 121.3 571 28.5
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 5.6e-25 120.2 578 27.5
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 7.3e-25 119.8 423 30.5
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 9.6e-25 119.4 516 29.8
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 1.6e-24 118.6 626 28.0
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 2.8e-24 117.9 604 27.0
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 6.2e-24 116.7 576 27.8
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 1.8e-23 115.2 525 29.3
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 4.0e-23 114.0 523 29.3
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 5.3e-23 113.6 530 26.2
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 6.9e-23 113.2 565 28.0
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 6.9e-23 113.2 664 26.1
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 6.9e-23 113.2 588 32.1
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.5e-22 112.1 522 28.9
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 4.5e-22 110.5 516 29.5
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 7.6e-22 109.8 620 27.9
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 1.7e-21 108.6 636 25.9
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 1.7e-21 108.6 437 29.7
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 2.2e-21 108.2 479 29.0
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 2.9e-21 107.8 416 29.8
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 3.8e-21 107.5 406 31.0
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 3.8e-21 107.5 484 27.9
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 3.8e-21 107.5 590 26.8
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 2.4e-20 104.8 521 29.0
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 5.4e-20 103.6 394 30.7
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 5.4e-20 103.6 477 29.1
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 7.1e-20 103.2 581 27.2
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 4.6e-19 100.5 526 29.1
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 7.9e-19 99.8 515 28.3
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 1.3e-18 99.0 453 30.5
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 1.3e-18 99.0 557 29.1
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 1.8e-18 98.6 431 28.3
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 3.0e-18 97.8 643 24.6
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 5.1e-18 97.1 423 29.1
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 6.7e-18 96.7 567 28.2
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 2.5e-17 94.7 503 26.0
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 1.6e-16 92.0 518 26.8
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 2.1e-16 91.7 487 28.7
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 2.8e-16 91.3 388 26.3
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 1.1e-15 89.4 534 27.7
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 4.0e-15 87.4 577 26.2
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 1.2e-14 85.9 632 25.3
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 1.5e-14 85.5 463 27.0
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 2.9e-13 81.3 296 31.8
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 3.8e-13 80.9 527 27.3
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 1.1e-12 79.3 445 26.7
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 1.1e-12 79.3 508 26.6
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 1.4e-12 79.0 431 27.8
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 2.4e-12 78.2 490 23.5
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 4.2e-12 77.4 551 28.5
AL8G29040 Arabidopsis lyrata HOM05D012500 ORTHO05D009211 1.2e-11 75.9 334 29.0
Os07g0107900 Oryza sativa ssp. japonica HOM05D061528 ORTHO05D009211 1.6e-11 75.5 303 29.0
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 2.7e-11 74.7 540 26.1
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 4.6e-11 73.9 68 58.8
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 6.0e-11 73.6 583 25.6
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 6.0e-11 73.6 260 28.8
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 1.0e-10 72.8 274 29.9
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 1.3e-10 72.4 493 28.4
Carub.0008s1424 Capsella rubella HOM05D012500 ORTHO05D009211 1.3e-10 72.4 445 26.1
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 1.8e-10 72.0 282 27.7
Oeu051084.1 Olea europaea HOM05D007892 ORTHO05D009211 1.8e-10 72.0 212 27.8
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 2.3e-10 71.6 260 28.1
AT5G53930 Arabidopsis thaliana HOM05D012500 ORTHO05D009211 3.0e-10 71.2 285 29.8
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 3.0e-10 71.2 446 24.9
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 5.1e-10 70.5 258 28.3
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 5.1e-10 70.5 517 24.4
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 8.7e-10 69.7 346 27.2
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 1.5e-09 68.9 234 29.5
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 1.9e-09 68.6 420 25.5
Atru.chr2.2419 Acer truncatum HOM05D007892 ORTHO05D009211 2.5e-09 68.2 355 24.8
PSO541G2379 Papaver somniferum HOM05D056025 ORTHO05D009211 7.4e-09 66.6 285 28.1
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 7.4e-09 66.6 471 23.8
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 9.6e-09 66.2 64 57.8
ECA236G4021 Erigeron canadensis HOM05D000553 ORTHO05D009211 1.3e-08 65.9 600 24.3
Zm00001eb298400 Zea mays HOM05D061528 ORTHO05D009211 6.2e-08 63.5 347 27.1
BcaB05g22092 Brassica carinata HOM05D012500 ORTHO05D009211 2.6e-06 58.2 333 27.6


User provided reference genes

Program Settings