Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 2.0e-289 998.4 524 100.0
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 1.2e-260 902.9 524 89.5
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 2.0e-260 902.1 524 90.3
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 3.1e-258 894.8 524 88.9
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 5.3e-205 718.0 524 70.6
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 3.3e-199 698.7 524 68.7
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 2.6e-196 689.1 527 68.3
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 1.3e-187 660.2 527 67.0
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 5.0e-187 658.3 642 57.5
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 1.1e-183 647.1 542 64.4
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 2.2e-182 642.9 525 64.0
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 1.1e-181 640.6 527 63.2
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 3.1e-181 639.0 551 63.2
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 4.1e-181 638.6 551 63.2
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 7.7e-180 634.4 520 65.0
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 8.5e-179 630.9 527 64.1
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 3.2e-178 629.0 527 63.2
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 9.4e-178 627.5 527 63.2
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 2.1e-177 626.3 539 63.3
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 4.6e-177 625.2 527 63.0
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 6.1e-177 624.8 527 61.9
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 1.4e-176 623.6 527 63.0
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 1.8e-176 623.2 527 63.2
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 5.1e-176 621.7 527 62.8
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 2.0e-175 619.8 522 63.6
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 2.6e-175 619.4 520 64.4
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 2.6e-175 619.4 520 64.4
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 3.3e-175 619.0 527 61.3
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 3.3e-175 619.0 525 61.0
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 5.7e-175 618.2 525 61.0
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 7.4e-175 617.8 527 62.2
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 1.3e-174 617.1 527 63.0
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 3.7e-174 615.5 527 62.2
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 1.1e-173 614.0 519 61.1
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 1.1e-173 614.0 523 63.1
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 4.1e-173 612.1 525 61.3
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 4.1e-173 612.1 328 97.9
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 9.1e-173 610.9 539 60.7
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 9.1e-173 610.9 525 62.1
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 2.6e-172 609.4 527 61.1
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 4.5e-172 608.6 530 61.7
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 7.7e-172 607.8 528 61.9
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 3.8e-171 605.5 528 60.0
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 1.1e-170 604.0 530 61.1
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 2.5e-170 602.8 524 59.4
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 7.2e-170 601.3 526 61.0
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 2.7e-169 599.4 524 60.3
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 6.1e-169 598.2 557 59.1
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 6.1e-169 598.2 572 57.3
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 1.0e-168 597.4 526 60.8
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 3.0e-168 595.9 525 59.8
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 8.8e-168 594.3 529 59.7
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 2.6e-167 592.8 498 62.9
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 7.4e-167 591.3 529 59.5
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 1.8e-165 586.6 523 60.6
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 4.1e-165 585.5 527 60.7
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 5.5e-162 575.1 516 57.6
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 1.2e-161 573.9 525 58.5
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 1.2e-161 573.9 540 58.9
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 2.3e-160 569.7 527 58.1
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 2.0e-159 566.6 327 89.9
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 2.0e-156 556.6 574 54.9
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 2.0e-156 556.6 525 56.4
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 1.3e-155 553.9 524 58.4
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 6.5e-155 551.6 525 55.6
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 6.1e-153 545.0 527 54.8
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 9.8e-151 537.7 527 55.2
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 2.2e-150 536.6 445 63.4
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 8.3e-150 534.6 464 62.1
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 5.5e-146 521.9 526 55.5
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 4.7e-145 518.8 521 54.7
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 8.0e-145 518.1 525 56.0
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 4.0e-144 515.8 519 52.8
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 1.3e-142 510.8 519 52.4
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 1.7e-142 510.4 519 52.4
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 5.4e-141 505.4 521 53.4
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 1.3e-139 500.7 515 54.0
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 4.3e-138 495.7 519 52.0
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 1.8e-136 490.3 519 51.1
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 5.2e-136 488.8 519 51.3
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 8.3e-134 481.5 419 62.8
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 7.0e-133 478.4 463 55.9
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 2.0e-132 476.9 530 49.4
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 1.0e-131 474.6 530 50.0
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 3.9e-131 472.6 546 49.1
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 1.1e-130 471.1 545 48.8
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 7.3e-130 468.4 389 63.2
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 1.4e-128 464.2 515 48.9
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 1.4e-128 464.2 451 56.5
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 1.1e-125 454.5 519 49.5
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 6.0e-124 448.7 515 47.6
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 4.9e-118 429.1 407 58.5
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 8.3e-118 428.3 392 59.2
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 3.5e-108 396.4 524 46.0
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 1.3e-107 394.4 554 44.2
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 1.2e-100 371.3 290 65.5
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 1.2e-100 371.3 290 65.5
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 2.8e-97 360.1 521 44.3
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 1.6e-92 344.4 181 95.0
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 1.5e-87 327.8 513 39.0
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 1.9e-77 294.3 523 36.9
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 2.5e-74 283.9 369 48.2
Peaxi162Scf00069g01838 Petunia axillaris HOM05D005607 ORTHO05D008142 4.3e-74 283.1 163 88.3
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 3.7e-73 280.0 535 35.1
QL08p023973 Quercus lobata HOM05D005607 ORTHO05D008142 7.4e-66 255.8 193 67.4
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 1.3e-65 255.0 236 60.2
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 1.7e-65 254.6 269 56.1
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 6.1e-52 209.5 499 32.7
Glyma.12G162201 Glycine max HOM05D005607 ORTHO05D008142 5.2e-51 206.5 172 60.5
MD11G1279000 Malus domestica HOM05D005607 ORTHO05D008142 5.3e-48 196.4 287 46.3
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 7.7e-47 192.6 229 48.5
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 3.0e-35 154.1 113 68.1
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 3.1e-32 144.1 106 67.9
CBR_g2884 Chara braunii HOM05D005607 ORTHO05D008142 7.0e-32 142.9 290 36.6
SEGI_34734 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 3.1e-24 117.5 124 51.6
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 1.0e-19 102.4 135 41.5
EL10Ac6g14983 Beta vulgaris HOM05D005607 ORTHO05D008142 3.7e-17 94.0 101 51.5
MELO3C033904.2 Cucumis melo HOM05D005607 ORTHO05D008142 2.7e-15 87.8 95 50.5
HanXRQChr10g0304121 Helianthus annuus HOM05D005607 ORTHO05D008142 3.4e-10 70.9 96 47.9


User provided reference genes

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