Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 1.7e-188 662.5 339 100.0
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 3.2e-187 658.3 339 99.1
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.0e-181 639.0 339 96.2
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 5.4e-142 508.1 333 80.5
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 9.5e-131 470.7 343 70.3
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 4.0e-129 465.3 335 74.9
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 2.3e-124 449.5 347 68.3
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 5.6e-123 444.9 301 74.8
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 2.8e-122 442.6 329 71.7
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 6.2e-122 441.4 308 73.4
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 2.3e-121 439.5 333 71.5
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 2.6e-120 436.0 347 66.3
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 6.0e-117 424.9 339 67.3
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 1.0e-116 424.1 339 67.3
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 3.9e-116 422.2 345 66.1
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 3.9e-116 422.2 340 65.3
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 1.9e-115 419.9 346 65.6
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.9e-115 419.9 344 66.0
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 3.3e-115 419.1 350 64.0
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 2.1e-114 416.4 303 69.0
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 1.1e-113 414.1 348 64.9
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 1.1e-113 414.1 344 64.5
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 1.4e-113 413.7 327 66.7
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 2.3e-113 412.9 335 65.4
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 2.0e-112 409.8 346 63.9
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 2.0e-112 409.8 327 67.3
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 2.0e-112 409.8 342 64.9
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 4.4e-112 408.7 351 63.0
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 7.5e-112 407.9 337 66.2
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 9.9e-112 407.5 347 64.6
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 2.2e-111 406.4 339 65.8
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 2.9e-111 406.0 348 64.4
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 1.4e-110 403.7 354 63.0
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 1.4e-110 403.7 339 64.9
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 5.4e-110 401.7 346 62.7
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 1.6e-109 400.2 345 62.9
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 2.1e-109 399.8 331 63.1
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 4.6e-109 398.7 343 62.7
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 1.3e-108 397.1 346 61.6
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.3e-108 396.4 342 64.0
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 3.0e-108 396.0 344 62.8
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 8.6e-108 394.4 344 62.5
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 8.6e-108 394.4 347 63.4
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 4.3e-107 392.1 345 61.4
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 5.6e-107 391.7 346 60.4
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 5.6e-107 391.7 380 58.9
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.2e-106 390.6 351 63.2
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 3.6e-106 389.0 347 62.2
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 6.2e-106 388.3 345 61.7
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 6.2e-106 388.3 333 63.1
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 1.4e-105 387.1 350 61.4
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.4e-105 387.1 335 61.2
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 3.1e-105 386.0 347 61.7
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 3.1e-105 386.0 332 62.3
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 4.0e-105 385.6 338 63.6
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 5.2e-105 385.2 350 60.6
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 5.2e-105 385.2 338 63.3
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 6.8e-105 384.8 324 63.6
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 6.8e-105 384.8 351 60.7
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 8.9e-105 384.4 350 60.6
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 8.9e-105 384.4 348 61.2
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 8.9e-105 384.4 352 61.4
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 1.2e-104 384.0 340 61.8
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 1.5e-104 383.6 344 59.3
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 2.0e-104 383.3 338 63.0
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 2.0e-104 383.3 338 63.0
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 2.0e-104 383.3 341 59.5
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 2.6e-104 382.9 341 58.9
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 3.4e-104 382.5 350 60.6
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 3.4e-104 382.5 338 63.0
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 4.4e-104 382.1 350 59.1
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 4.4e-104 382.1 348 58.6
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 4.4e-104 382.1 345 61.2
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 4.4e-104 382.1 376 57.4
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 3.8e-103 379.0 363 60.6
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 3.2e-102 375.9 342 61.1
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 7.1e-102 374.8 344 59.6
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 9.2e-102 374.4 334 60.8
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 2.3e-100 369.8 339 58.7
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 4.0e-97 359.0 324 61.1
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 6.9e-97 358.2 346 57.2
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 2.0e-96 356.7 320 60.3
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 2.4e-94 349.7 353 56.1
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.3e-90 337.4 307 62.9
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 1.6e-90 337.0 263 68.1
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 8.1e-90 334.7 347 55.9
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 4.0e-89 332.4 336 54.8
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 2.4e-86 323.2 231 70.1
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 9.3e-86 321.2 352 55.4
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 1.5e-83 313.9 263 63.1
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 1.1e-81 307.8 231 68.4
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.5e-80 303.9 280 62.5
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 9.9e-80 301.2 236 67.4
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 6.4e-79 298.5 330 53.9
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 8.7e-76 288.1 280 60.4
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 4.3e-75 285.8 409 44.5
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 4.3e-75 285.8 333 47.1
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 2.9e-71 273.1 186 70.4
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 1.9e-70 270.4 243 62.1
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 3.9e-68 262.7 281 54.8
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 2.5e-67 260.0 392 43.6
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 1.3e-66 257.7 342 45.9
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 9.4e-62 241.5 283 47.7
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 1.4e-60 237.7 269 46.5
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 3.6e-53 213.0 185 63.2
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 5.1e-52 209.1 247 47.4
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 4.4e-51 206.1 319 41.1
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 1.3e-42 177.9 182 59.3
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 1.6e-40 171.0 243 46.1
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 1.5e-35 154.5 101 77.2
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 1.7e-26 124.4 72 79.2
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 6.6e-23 112.5 90 65.6
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 4.2e-22 109.8 293 29.0
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 1.6e-21 107.8 90 63.3
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 4.0e-20 103.2 60 81.7
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 5.7e-19 99.4 264 31.1
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.1e-14 85.1 90 56.7
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 5.6e-14 82.8 196 31.6
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 7.3e-14 82.4 77 51.9
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 2.1e-13 80.9 95 52.6
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 8.3e-10 68.9 55 65.5
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 8.3e-10 68.9 55 65.5
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 3.2e-09 67.0 252 27.4
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 4.1e-09 66.6 42 73.8
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.0e-07 62.0 246 25.2
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.0e-07 62.0 246 25.2
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 3.9e-07 60.1 157 31.2
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 5.0e-07 59.7 159 26.4
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 1.9e-06 57.8 154 27.9
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 1.9e-06 57.8 155 27.7
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 7.3e-06 55.8 153 28.1
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 7.3e-06 55.8 153 28.1


User provided reference genes

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