Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 7.4e-33 143.3 72 100.0
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 7.4e-33 143.3 72 100.0
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 6.9e-31 136.7 72 95.8
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 2.6e-30 134.8 72 93.1
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 3.4e-30 134.4 70 94.3
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 3.8e-29 131.0 72 90.3
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 4.6e-27 124.0 62 100.0
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.1e-25 119.4 72 83.3
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.1e-25 119.4 74 82.4
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 1.5e-25 119.0 62 95.2
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 2.4e-23 111.7 74 77.0
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 3.0e-18 94.7 74 64.9
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.7e-18 93.6 74 64.9
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.7e-18 93.6 74 64.9
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 4.3e-17 90.9 74 63.5
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 4.3e-17 90.9 70 64.3
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 9.7e-17 89.7 69 68.1
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 1.3e-16 89.4 74 62.2
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 3.7e-16 87.8 74 60.8
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.4e-15 85.9 69 65.2
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.4e-15 85.1 61 70.5
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 5.3e-15 84.0 74 56.8
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 6.9e-15 83.6 71 63.4
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.2e-14 82.8 70 60.0
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.2e-14 82.8 69 65.2
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 2.6e-14 81.6 74 55.4
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.6e-14 81.6 74 56.8
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.6e-14 81.6 70 57.1
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 3.4e-14 81.3 74 55.4
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 4.5e-14 80.9 74 56.8
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 5.9e-14 80.5 74 55.4
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.0e-13 79.7 74 56.8
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 1.0e-13 79.7 69 63.8
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.7e-13 79.0 74 60.8
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.7e-13 79.0 74 55.4
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 2.2e-13 78.6 74 55.4
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 2.2e-13 78.6 70 60.0
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 6.5e-13 77.0 70 58.6
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.9e-12 75.5 68 58.8
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 2.5e-12 75.1 70 55.7
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.5e-12 75.1 74 56.8
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 3.2e-12 74.7 69 59.4
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 4.2e-12 74.3 74 54.1
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 5.5e-12 73.9 68 55.9
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 7.2e-12 73.6 71 53.5
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.2e-11 72.8 69 55.1
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.2e-11 72.8 69 55.1
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.6e-11 72.4 75 54.7
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.6e-11 72.4 75 54.7
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 2.1e-11 72.0 70 55.7
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 4.6e-11 70.9 69 56.5
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 6.1e-11 70.5 78 51.3
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 7.9e-11 70.1 74 48.6
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 7.9e-11 70.1 69 55.1
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.0e-10 69.7 71 53.5
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.0e-10 69.7 60 56.7
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 3.0e-10 68.2 74 52.7
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 5.1e-10 67.4 71 52.1
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.1e-09 66.2 69 52.2
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.5e-09 65.9 74 52.7
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 4.3e-09 64.3 60 56.7
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 5.7e-09 63.9 69 56.5
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 9.7e-09 63.2 74 45.9
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.3e-08 62.8 69 58.0
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.8e-08 61.6 71 53.5
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.8e-08 61.6 72 48.6
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 3.7e-08 61.2 73 47.9
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 3.7e-08 61.2 73 47.9
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 3.7e-08 61.2 73 47.9
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 6.3e-08 60.5 72 45.8
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 6.3e-08 60.5 72 45.8
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 6.3e-08 60.5 69 47.8
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 6.3e-08 60.5 72 45.8
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 6.3e-08 60.5 68 47.1
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 8.2e-08 60.1 71 52.1
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 8.2e-08 60.1 70 48.6
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 8.2e-08 60.1 69 49.3
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.4e-07 59.3 68 39.7
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.4e-07 59.3 69 50.7
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.4e-07 59.3 71 46.5
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.8e-07 58.9 68 47.1
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.4e-07 58.5 76 48.7
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 3.1e-07 58.2 67 44.8
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.1e-07 58.2 72 44.4
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 3.1e-07 58.2 72 44.4
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 4.1e-07 57.8 68 51.5
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 4.1e-07 57.8 69 46.4
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 5.3e-07 57.4 68 47.1
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 6.9e-07 57.0 70 41.4
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 9.1e-07 56.6 69 49.3
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 3.4e-06 54.7 76 44.7
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 5.9e-06 53.9 69 46.4
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 5.9e-06 53.9 69 46.4


User provided reference genes

Program Settings