Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 1.0e-229 799.7 399 100.0
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 5.0e-224 780.8 399 97.7
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 6.0e-185 651.0 407 81.3
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 6.0e-185 651.0 403 81.4
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.3e-184 649.8 407 81.6
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.0e-180 636.0 407 80.8
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.5e-178 629.0 353 87.8
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 3.0e-168 595.5 406 76.4
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 2.2e-139 499.6 407 63.4
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 3.1e-133 479.2 404 61.6
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 5.9e-132 474.9 407 60.2
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 1.0e-131 474.2 398 61.6
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 6.5e-131 471.5 342 67.8
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 4.2e-130 468.8 406 60.3
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 4.7e-129 465.3 411 57.4
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 3.0e-128 462.6 406 57.9
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.5e-127 460.3 409 57.5
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 4.4e-127 458.8 414 56.8
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.2e-124 450.7 337 64.1
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 1.7e-123 446.8 397 58.9
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 8.6e-123 444.5 391 60.1
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.9e-122 443.4 410 57.3
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 2.5e-122 443.0 408 53.7
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 1.6e-121 440.3 390 60.0
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 3.6e-121 439.1 350 58.9
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.4e-120 437.2 407 54.8
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 1.4e-120 437.2 348 59.8
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.8e-120 436.8 320 63.4
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 5.2e-120 435.3 399 55.9
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 6.8e-120 434.9 404 56.7
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 6.8e-120 434.9 341 63.0
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 6.8e-120 434.9 321 64.8
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 2.6e-119 433.0 328 63.7
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.6e-119 433.0 399 58.4
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.2e-118 429.9 337 60.2
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 2.4e-117 426.4 321 64.2
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.4e-117 426.4 321 63.6
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 4.1e-117 425.6 318 64.8
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 5.4e-117 425.2 416 56.5
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 1.6e-116 423.7 321 62.0
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 4.6e-116 422.2 321 63.2
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 7.8e-116 421.4 384 55.5
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 1.7e-115 420.2 408 52.7
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 2.3e-115 419.9 339 58.7
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 2.9e-115 419.5 324 63.6
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 6.6e-115 418.3 320 61.2
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.9e-114 416.8 318 61.9
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 5.6e-114 415.2 416 52.6
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 9.5e-114 414.5 399 54.6
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 1.2e-113 414.1 407 51.4
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.2e-113 414.1 348 59.2
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 1.6e-113 413.7 406 52.2
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 3.6e-113 412.5 399 54.4
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 4.7e-113 412.1 302 64.2
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 6.2e-113 411.8 319 59.6
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 1.0e-112 411.0 415 53.3
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.4e-112 410.6 327 58.7
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.3e-112 409.8 386 52.6
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 3.1e-112 409.5 327 58.7
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 4.0e-112 409.1 365 54.0
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 4.0e-112 409.1 365 54.0
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 5.2e-112 408.7 404 52.5
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 6.8e-112 408.3 367 56.9
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 8.9e-112 407.9 373 53.6
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 8.9e-112 407.9 388 52.1
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.2e-111 407.5 324 59.0
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 3.4e-111 406.0 327 57.8
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 3.4e-111 406.0 324 60.2
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 3.4e-111 406.0 309 61.8
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 4.4e-111 405.6 327 58.4
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 5.8e-111 405.2 325 57.8
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 7.5e-111 404.8 404 52.0
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 7.5e-111 404.8 369 52.8
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 7.5e-111 404.8 390 55.6
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.3e-110 404.1 331 57.7
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.2e-110 403.3 399 53.9
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 4.9e-110 402.1 331 57.4
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.1e-109 401.0 348 54.6
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 1.6e-108 397.1 319 58.0
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 2.0e-108 396.7 299 62.2
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 2.7e-108 396.4 347 55.6
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 3.5e-108 396.0 309 59.5
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.3e-107 394.0 378 51.6
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.7e-107 393.7 333 60.7
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 3.9e-107 392.5 463 48.6
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 3.3e-106 389.4 390 50.8
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.6e-105 387.1 394 49.5
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.4e-104 384.0 317 56.5
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 5.2e-104 382.1 391 51.2
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 6.8e-104 381.7 330 57.9
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 2.6e-103 379.8 391 51.4
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.4e-101 374.0 389 50.4
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 3.2e-101 372.9 392 50.3
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.2e-101 372.9 332 57.8
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 7.1e-101 371.7 319 57.1
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.6e-100 370.5 303 61.7
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 5.1e-99 365.5 320 56.2
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 7.3e-98 361.7 317 54.3
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 4.7e-97 359.0 387 49.1
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.4e-96 357.5 321 53.9
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.2e-94 350.1 316 55.1
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.4e-93 347.4 343 54.5
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 5.8e-87 325.5 396 41.9
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 7.8e-84 315.1 267 59.2
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 2.1e-81 307.0 446 41.7
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.5e-79 300.8 226 62.4
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 1.3e-78 297.7 306 51.0
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.7e-76 290.0 228 58.8
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 4.3e-74 282.7 283 52.3
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 8.1e-73 278.5 209 62.2
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 4.2e-69 266.2 217 58.5
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 5.1e-67 259.2 366 42.9
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 4.8e-65 252.7 351 43.6
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 6.2e-65 252.3 328 42.7
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.6e-49 201.1 189 54.5
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 4.8e-49 199.5 151 69.5
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 3.1e-48 196.8 265 41.1
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.3e-40 169.5 133 60.2
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 3.4e-39 166.8 122 60.7
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 2.3e-35 154.1 125 67.2
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.5e-34 151.4 122 57.4
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 5.7e-34 149.4 179 40.8
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 1.8e-32 144.4 314 28.3
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 1.2e-31 141.7 193 41.5
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 2.6e-26 124.0 150 41.3
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 8.2e-25 119.0 76 71.1
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 5.3e-24 116.3 91 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 1.3e-22 111.7 230 31.3
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 3.8e-22 110.2 287 25.1
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.1e-20 104.4 69 66.7
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.4e-19 101.7 91 51.6
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.4e-19 101.7 246 35.8
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.4e-18 97.1 88 51.1
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 4.4e-18 96.7 247 26.3
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 2.1e-12 77.8 295 23.4
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.6e-12 77.0 70 57.1
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.3e-06 58.5 125 32.8
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.3e-06 58.5 125 32.8


User provided reference genes

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