Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 1.0e-111 408.3 587 100.0
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 2.7e-88 330.5 599 78.0
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.0e-76 292.0 578 83.6
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 1.9e-62 244.6 605 85.8
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 2.1e-61 241.1 588 86.7
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 6.4e-58 229.6 605 85.0
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.6e-56 224.9 575 87.7
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 3.9e-39 167.2 218 77.5
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 5.8e-35 153.3 218 74.3
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 7.6e-35 152.9 188 82.4
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 1.7e-34 151.8 205 76.1
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.4e-33 148.7 202 77.7
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 6.0e-32 143.3 202 75.7
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.1e-30 139.0 190 74.7
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 1.9e-30 138.3 197 75.1
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 4.3e-30 137.1 165 80.6
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.6e-29 135.2 201 73.1
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.6e-29 135.2 200 75.0
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 2.1e-29 134.8 176 81.8
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.8e-29 133.7 190 75.8
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 8.1e-29 132.9 202 70.3
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 1.4e-28 132.1 217 63.6
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 1.4e-28 132.1 202 70.8
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 2.4e-28 131.3 197 71.6
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 2.4e-28 131.3 203 72.4
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 3.1e-28 131.0 210 68.6
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.1e-28 131.0 203 72.4
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 5.3e-28 130.2 219 69.4
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 9.0e-28 129.4 198 71.7
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 9.0e-28 129.4 190 73.7
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 9.0e-28 129.4 186 73.7
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 9.0e-28 129.4 202 72.8
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 1.2e-27 129.0 188 73.4
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.2e-27 129.0 210 68.6
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.2e-27 129.0 202 69.3
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 1.5e-27 128.6 203 70.9
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 1.5e-27 128.6 188 75.0
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 1.5e-27 128.6 187 74.3
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 2.0e-27 128.3 197 70.1
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 2.6e-27 127.9 200 71.5
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 4.5e-27 127.1 219 69.9
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 5.8e-27 126.7 197 69.5
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 5.8e-27 126.7 204 70.1
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 9.9e-27 125.9 202 71.8
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 1.3e-26 125.6 203 70.9
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.3e-26 125.6 203 71.4
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 2.9e-26 124.4 165 81.2
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 3.8e-26 124.0 188 69.7
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 4.9e-26 123.6 198 68.7
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 6.4e-26 123.2 188 75.0
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.4e-26 123.2 203 70.4
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 6.4e-26 123.2 198 72.7
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 8.4e-26 122.9 203 70.4
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.1e-25 122.5 190 72.1
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 1.4e-25 122.1 197 70.1
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.9e-25 121.7 201 71.1
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 2.4e-25 121.3 189 73.0
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 3.2e-25 120.9 192 46.9
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 4.2e-25 120.6 187 73.3
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 5.4e-25 120.2 176 75.0
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 1.6e-24 118.6 198 37.4
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 2.1e-24 118.2 198 72.7
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 2.7e-24 117.9 200 66.0
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 2.7e-24 117.9 205 67.3
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 4.6e-24 117.1 200 36.0
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 4.6e-24 117.1 203 68.5
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 6.0e-24 116.7 202 48.0
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.0e-23 115.9 188 54.3
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.3e-23 115.5 191 68.6
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 1.8e-23 115.2 203 66.5
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 3.0e-23 114.4 203 68.5
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 6.7e-23 113.2 203 68.5
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 2.5e-22 111.3 186 66.1
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 3.3e-22 110.9 152 42.1
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 4.3e-22 110.5 202 68.3
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 5.6e-22 110.2 190 70.5
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 5.6e-22 110.2 189 73.0
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 7.4e-22 109.8 188 73.9
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 1.3e-21 109.0 191 69.6
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 1.3e-21 109.0 198 69.7
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.3e-21 109.0 198 69.7
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.3e-21 109.0 84 70.2
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 1.3e-21 109.0 219 66.2
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.3e-21 109.0 191 36.1
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.6e-21 108.6 205 64.9
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.1e-21 108.2 198 70.2
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 2.1e-21 108.2 189 65.1
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 2.1e-21 108.2 189 65.1
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 2.1e-21 108.2 189 65.1
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 2.1e-21 108.2 200 67.0
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 2.1e-21 108.2 198 66.7
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 2.8e-21 107.8 189 65.1
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 2.8e-21 107.8 189 65.1
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 2.8e-21 107.8 191 69.1
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 2.8e-21 107.8 189 67.2
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 3.7e-21 107.5 198 69.2
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 4.8e-21 107.1 189 65.6
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 6.2e-21 106.7 198 69.7
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 8.1e-21 106.3 189 35.4
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 8.1e-21 106.3 186 68.3
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 8.1e-21 106.3 166 78.3
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 1.4e-20 105.5 188 62.2
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 1.8e-20 105.1 191 68.6
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 3.1e-20 104.4 191 68.6
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 5.3e-20 103.6 191 67.0
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 6.9e-20 103.2 188 40.4
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 6.9e-20 103.2 198 66.2
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 6.9e-20 103.2 189 69.3
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 9.0e-20 102.8 203 44.8
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 9.0e-20 102.8 188 63.3
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 1.5e-19 102.1 191 67.5
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 1.5e-19 102.1 191 67.5
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 1.5e-19 102.1 190 42.1
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 1.5e-19 102.1 188 71.3
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 2.0e-19 101.7 203 66.5
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 2.6e-19 101.3 180 66.7
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 2.6e-19 101.3 165 73.9
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 3.4e-19 100.9 190 33.7
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 4.5e-19 100.5 198 65.7
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 4.5e-19 100.5 198 65.7
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 5.8e-19 100.1 88 59.1
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 7.6e-19 99.8 198 66.7
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 7.6e-19 99.8 198 66.7
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 1.3e-18 99.0 82 63.4
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 2.2e-18 98.2 165 76.4
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 2.2e-18 98.2 190 65.3
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.9e-18 97.8 178 65.2
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.9e-18 97.8 186 51.1
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 4.9e-18 97.1 188 59.0
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 6.4e-18 96.7 186 51.6
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 8.4e-18 96.3 83 61.4
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 1.1e-17 95.9 188 34.0
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 1.1e-17 95.9 186 31.2
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 3.2e-17 94.4 186 44.6
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 4.2e-17 94.0 101 52.5
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 5.5e-17 93.6 96 56.2
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 5.5e-17 93.6 165 73.3
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 7.1e-17 93.2 175 70.9
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 7.1e-17 93.2 87 60.9
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 9.3e-17 92.8 96 57.3
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 9.3e-17 92.8 69 68.1
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 9.3e-17 92.8 188 65.4
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.2e-16 92.4 186 65.1
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 1.6e-16 92.0 178 65.7
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.1e-16 91.7 178 64.0
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 2.1e-16 91.7 188 66.5
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.1e-16 91.7 188 65.4
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 2.1e-16 91.7 188 65.4
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 4.6e-16 90.5 202 61.9
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 6.0e-16 90.1 189 60.8
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.0e-15 89.4 186 31.2
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 1.3e-15 89.0 84 53.6
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 1.3e-15 89.0 189 64.6
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 1.8e-15 88.6 202 59.9
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.8e-15 88.6 202 62.9
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.8e-15 88.6 81 59.3
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 3.0e-15 87.8 87 55.2
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 1.5e-14 85.5 171 33.9
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 3.3e-14 84.3 167 31.7
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 4.3e-14 84.0 205 61.5
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 5.6e-14 83.6 204 62.3
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 8.2e-13 79.7 189 58.2
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 8.2e-13 79.7 189 58.2
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 1.1e-12 79.3 74 56.8
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.1e-12 79.3 189 58.7
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 1.2e-11 75.9 72 54.2
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 2.0e-11 75.1 71 57.7
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 2.6e-11 74.7 47 70.2
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 3.4e-11 74.3 148 38.5
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 7.6e-11 73.2 202 56.9
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 7.6e-11 73.2 202 56.9
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 7.6e-11 73.2 70 50.0
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.7e-10 72.0 44 65.9
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.7e-10 72.0 85 51.8
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 2.2e-10 71.6 45 64.4
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 8.4e-10 69.7 45 66.7
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 3.5e-08 64.3 42 69.0
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 3.0e-07 61.2 75 45.3
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 5.1e-07 60.5 70 47.1
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 6.7e-07 60.1 41 61.0
FAN23G2385 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.7e-07 60.1 133 28.6


User provided reference genes

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