Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 3.8e-31 137.9 88 100.0
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 7.1e-30 133.7 88 97.7
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.0e-23 113.2 89 87.6
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.3e-19 97.8 59 83.1
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 3.7e-18 94.7 74 90.5
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.8e-18 94.4 75 89.3
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 4.5e-16 87.8 79 78.5
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 5.9e-16 87.4 79 78.5
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 7.7e-16 87.0 80 78.8
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 7.7e-16 87.0 78 79.5
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.9e-15 85.1 79 81.0
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.9e-15 85.1 72 81.9
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 8.5e-15 83.6 88 69.3
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 2.5e-14 82.0 79 70.9
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.2e-14 81.6 83 72.3
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.2e-14 81.6 88 68.2
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 7.2e-14 80.5 79 73.4
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.2e-14 80.5 79 70.9
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 9.4e-14 80.1 79 72.2
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.2e-13 79.7 90 68.9
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.6e-13 79.3 82 70.7
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.6e-13 79.3 82 70.7
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 2.1e-13 79.0 79 75.9
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.7e-13 78.6 81 74.1
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 3.6e-13 78.2 79 72.2
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 4.6e-13 77.8 79 72.2
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 6.1e-13 77.4 79 72.2
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 7.9e-13 77.0 79 70.9
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 7.9e-13 77.0 89 67.4
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 7.9e-13 77.0 81 71.6
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 7.9e-13 77.0 72 79.2
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.4e-12 76.3 83 72.3
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.4e-12 76.3 82 68.3
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 5.1e-12 74.3 89 47.2
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 5.1e-12 74.3 79 69.6
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 5.1e-12 74.3 79 69.6
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 5.1e-12 74.3 72 75.0
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 5.1e-12 74.3 88 64.8
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 5.1e-12 74.3 88 65.9
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 8.8e-12 73.6 82 67.1
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 2.5e-11 72.0 79 69.6
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 2.5e-11 72.0 77 71.4
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 2.5e-11 72.0 72 76.4
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.5e-11 72.0 79 68.4
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 2.5e-11 72.0 72 76.4
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.3e-11 71.6 81 67.9
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 4.3e-11 71.2 88 64.8
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 5.7e-11 70.9 81 67.9
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 5.7e-11 70.9 80 62.5
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 7.4e-11 70.5 81 65.4
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 7.4e-11 70.5 88 64.8
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 7.4e-11 70.5 88 67.0
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 9.7e-11 70.1 81 64.2
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-10 69.7 81 69.1
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 1.3e-10 69.7 74 68.9
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.3e-10 69.7 75 76.0
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 1.7e-10 69.3 85 68.2
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.2e-10 68.9 81 64.2
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.8e-10 68.6 81 65.4
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.8e-10 68.6 72 72.2
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 2.8e-10 68.6 88 67.0
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.8e-10 67.8 83 65.1
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 6.3e-10 67.4 46 76.1
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.3e-10 67.4 81 66.7
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 6.3e-10 67.4 89 65.2
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 8.2e-10 67.0 79 67.1
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 8.2e-10 67.0 73 74.0
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.1e-09 66.6 79 64.6
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 1.1e-09 66.6 81 65.4
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-09 66.6 81 65.4
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 1.1e-09 66.6 79 64.6
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.4e-09 66.2 87 63.2
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 1.4e-09 66.2 88 63.6
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 1.4e-09 66.2 74 70.3
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.4e-09 66.2 72 75.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 1.8e-09 65.9 90 42.2
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.8e-09 65.9 73 71.2
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 2.4e-09 65.5 79 64.6
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.4e-09 65.5 80 46.2
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 2.4e-09 65.5 84 61.9
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 3.1e-09 65.1 52 65.4
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 3.1e-09 65.1 73 69.9
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 4.1e-09 64.7 83 59.0
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 4.1e-09 64.7 83 65.1
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 4.1e-09 64.7 46 65.2
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 5.3e-09 64.3 72 69.4
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 5.3e-09 64.3 54 63.0
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 5.3e-09 64.3 54 63.0
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 5.3e-09 64.3 54 63.0
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 5.3e-09 64.3 90 46.7
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 6.9e-09 63.9 71 70.4
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 6.9e-09 63.9 81 42.0
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 6.9e-09 63.9 85 65.9
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 9.1e-09 63.5 53 62.3
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.2e-08 63.2 79 63.3
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.5e-08 62.8 81 67.9
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.6e-08 62.0 72 69.4
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 3.4e-08 61.6 82 58.5
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 3.4e-08 61.6 74 50.0
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 3.4e-08 61.6 88 61.4
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 4.5e-08 61.2 88 62.5
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 7.7e-08 60.5 82 59.8
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 7.7e-08 60.5 89 39.3
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 7.7e-08 60.5 89 41.6
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 7.7e-08 60.5 83 62.7
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 1.0e-07 60.1 46 67.4
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.0e-07 60.1 39 76.9
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.0e-07 60.1 73 46.6
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.3e-07 59.7 78 57.7
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.3e-07 59.7 63 55.6
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.7e-07 59.3 55 56.4
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.7e-07 59.3 73 47.9
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.9e-07 58.5 56 53.6
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 3.8e-07 58.2 71 64.8
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 3.8e-07 58.2 83 65.1
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 3.8e-07 58.2 72 69.4
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 5.0e-07 57.8 81 44.4
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 5.0e-07 57.8 84 64.3
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 5.0e-07 57.8 72 66.7
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 6.5e-07 57.4 79 64.6
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 6.5e-07 57.4 52 57.7
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 6.5e-07 57.4 81 58.0
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 8.5e-07 57.0 82 43.9
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.1e-06 56.6 72 72.2
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 1.1e-06 56.6 72 68.1
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.1e-06 56.6 46 63.0
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.4e-06 56.2 80 65.0
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 5.5e-06 54.3 51 60.8
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 5.5e-06 54.3 82 42.7
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 5.5e-06 54.3 77 40.3
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 7.2e-06 53.9 123 35.0
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 9.4e-06 53.5 44 65.9
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 9.4e-06 53.5 118 44.1
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 9.4e-06 53.5 87 37.9


User provided reference genes

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