Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g019990 Solanum pennellii HOM05D000067 ORTHO05D036873 5.0e-54 214.2 106 100.0
PGSC0003DMG400029201 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.5e-29 132.1 78 83.3
Sopen06g020030 Solanum pennellii HOM05D000067 ORTHO05D000097 2.8e-28 128.6 78 82.1
Solyc06g059930.4 Solanum lycopersicum HOM05D000067 ORTHO05D000097 6.4e-25 117.5 78 74.4
Sopen06g019970 Solanum pennellii HOM05D000067 ORTHO05D000097 4.1e-24 114.8 68 83.8
Sopen06g020040 Solanum pennellii HOM05D000067 ORTHO05D000097 9.2e-24 113.6 78 70.5
Sopen06g020050 Solanum pennellii HOM05D000067 ORTHO05D000097 9.2e-24 113.6 78 73.1
PGSC0003DMG400018066 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.7e-23 112.1 76 73.7
PGSC0003DMG400013034 Solanum tuberosum HOM05D000067 ORTHO05D000097 3.5e-23 111.7 76 72.4
PGSC0003DMG400011775 Solanum tuberosum HOM05D000067 ORTHO05D000097 4.7e-20 101.3 78 69.2
CAN.G134.87 Capsicum annuum HOM05D000067 ORTHO05D000097 2.3e-19 99.0 76 65.8
PGSC0003DMG400019784 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.3e-19 99.0 78 65.4
PGSC0003DMG400019773 Solanum tuberosum HOM05D000067 ORTHO05D000097 4.0e-19 98.2 76 65.8
PGSC0003DMG400019783 Solanum tuberosum HOM05D000067 ORTHO05D000097 8.9e-19 97.1 76 65.8
CAN.G1606.3 Capsicum annuum HOM05D000067 ORTHO05D000097 2.2e-17 92.4 78 60.3
Nitab4.5_0006116g0050 Nicotiana tabacum HOM05D000067 ORTHO05D000097 1.7e-14 82.8 77 59.7
PGSC0003DMG400013033 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.3e-14 82.4 76 56.6
Peaxi162Scf00180g00098 Petunia axillaris HOM05D000067 ORTHO05D000097 3.0e-14 82.0 92 50.0
Peaxi162Scf00074g00143 Petunia axillaris HOM05D000067 ORTHO05D000097 3.3e-13 78.6 77 57.1
Solyc06g060180.3 Solanum lycopersicum HOM05D000067 ORTHO05D000097 5.6e-13 77.8 78 56.4
Sopen06g020300 Solanum pennellii HOM05D000067 ORTHO05D000097 5.6e-13 77.8 78 56.4
Peaxi162Scf00190g01521 Petunia axillaris HOM05D000067 ORTHO05D000097 7.3e-13 77.4 77 53.2
PGSC0003DMG400011777 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.2e-12 76.6 76 55.3
PGSC0003DMG400024420 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.8e-12 75.5 76 52.6
PGSC0003DMG402029198 Solanum tuberosum HOM05D000067 ORTHO05D000097 3.6e-12 75.1 81 50.6
PGSC0003DMG400020941 Solanum tuberosum HOM05D000067 ORTHO05D000097 6.2e-12 74.3 76 55.3
Nitab4.5_0028193g0010 Nicotiana tabacum HOM05D000067 ORTHO05D000097 1.4e-11 73.2 70 57.1
Nitab4.5_0007710g0040 Nicotiana tabacum HOM05D000067 ORTHO05D000097 3.1e-11 72.0 74 54.1
CAN.G172.4 Capsicum annuum HOM05D000067 ORTHO05D000097 8.9e-11 70.5 77 49.4
PGSC0003DMG400017924 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.2e-10 70.1 76 48.7
Cc02_g29500 Coffea canephora HOM05D000067 ORTHO05D000097 2.0e-10 69.3 146 31.5
CAN.G681.20 Capsicum annuum HOM05D000067 ORTHO05D000097 4.4e-10 68.2 76 51.3
Nitab4.5_0003459g0020 Nicotiana tabacum HOM05D000067 ORTHO05D036873 4.4e-10 68.2 49 63.3
Peaxi162Scf00286g01042 Petunia axillaris HOM05D000090 ORTHO05D000083 5.8e-10 67.8 109 42.2
PGSC0003DMG400021868 Solanum tuberosum HOM05D000067 ORTHO05D000097 5.8e-10 67.8 76 51.3
Nitab4.5_0002505g0010 Nicotiana tabacum HOM05D000067 ORTHO05D000097 7.6e-10 67.4 76 46.1
Solyc09g092470.2 Solanum lycopersicum HOM05D000067 ORTHO05D000097 7.6e-10 67.4 78 47.4
GSVIVG01014558001 Vitis vinifera HOM05D000067 ORTHO05D000097 7.6e-10 67.4 80 46.2
GSVIVG01014557001 Vitis vinifera HOM05D000067 ORTHO05D000097 9.9e-10 67.0 80 45.0
Hma1.2p1_0485F.1_g163060 Hydrangea macrophylla HOM05D000067 ORTHO05D000097 1.7e-09 66.2 79 41.8
PGSC0003DMG400017923 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.2e-09 65.9 76 50.0
PGSC0003DMG400011783 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.9e-09 65.5 69 56.5
PGSC0003DMG400006713 Solanum tuberosum HOM05D000067 ORTHO05D000097 3.8e-09 65.1 69 55.1
Duzib213G0270 Durio zibethinus HOM05D000067 ORTHO05D000097 8.4e-09 63.9 100 38.0
Duzib213G0534 Durio zibethinus HOM05D000067 ORTHO05D000097 8.4e-09 63.9 100 38.0
PGSC0003DMG400020939 Solanum tuberosum HOM05D000067 ORTHO05D000097 8.4e-09 63.9 73 46.6
CSS0013555 Camellia sinensis var. sinensis HOM05D000067 ORTHO05D000097 1.1e-08 63.5 79 39.2
Cc05_g13060 Coffea canephora HOM05D000067 ORTHO05D000097 1.1e-08 63.5 76 44.7
PGSC0003DMG400020595 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.1e-08 63.5 78 44.9
Thecc.07G054000 Theobroma cacao HOM05D000067 ORTHO05D000097 1.1e-08 63.5 79 43.0
Duzib213G0552 Durio zibethinus HOM05D000067 ORTHO05D000097 1.4e-08 63.2 100 37.0
GSVIVG01014323001 Vitis vinifera HOM05D000067 ORTHO05D000097 1.4e-08 63.2 79 45.6
Duzib213G0129 Durio zibethinus HOM05D000067 ORTHO05D000097 1.9e-08 62.8 112 35.7
Cc05_g13070 Coffea canephora HOM05D000067 ORTHO05D000097 2.4e-08 62.4 76 42.1
CSS0006343 Camellia sinensis var. sinensis HOM05D000067 ORTHO05D000097 3.2e-08 62.0 76 40.8
Dinv22324 Davidia involucrata HOM05D000067 ORTHO05D000097 3.2e-08 62.0 79 43.0
Lsat_1_v5_gn_9_20260 Lactuca sativa HOM05D000067 ORTHO05D000097 3.2e-08 62.0 79 43.0
QL11p017188 Quercus lobata HOM05D000067 ORTHO05D000097 4.1e-08 61.6 79 41.8
QL11p017294 Quercus lobata HOM05D000067 ORTHO05D000097 4.1e-08 61.6 79 41.8
Sopen09g035370 Solanum pennellii HOM05D000067 ORTHO05D000097 4.1e-08 61.6 78 44.9
PGSC0003DMG400024419 Solanum tuberosum HOM05D000067 ORTHO05D000097 5.4e-08 61.2 91 44.0
Actinidia09944 Actinidia chinensis HOM05D000067 ORTHO05D000097 7.1e-08 60.8 79 40.5
CSS0031462 Camellia sinensis var. sinensis HOM05D000067 ORTHO05D000097 7.1e-08 60.8 79 38.0
GSVIVG01014324001 Vitis vinifera HOM05D000067 ORTHO05D000097 7.1e-08 60.8 79 44.3
Nn3g21448 Nelumbo nucifera HOM05D000067 ORTHO05D000097 9.2e-08 60.5 73 46.6
SalBow7G1463 Salvia bowleyana HOM05D000067 ORTHO05D000097 9.2e-08 60.5 74 43.2
Thecc.07G057200 Theobroma cacao HOM05D000067 ORTHO05D000097 9.2e-08 60.5 73 43.8
GSVIVG01014566001 Vitis vinifera HOM05D000067 ORTHO05D000097 9.2e-08 60.5 100 38.0
GSVIVG01014569001 Vitis vinifera HOM05D000067 ORTHO05D000097 9.2e-08 60.5 100 38.0
QL11p016651 Quercus lobata HOM05D000067 ORTHO05D000097 1.2e-07 60.1 79 41.8
Solyc06g060010.4 Solanum lycopersicum HOM05D000067 ORTHO05D000097 1.2e-07 60.1 91 42.9
Sopen06g020150 Solanum pennellii HOM05D000067 ORTHO05D000097 1.2e-07 60.1 91 42.9
QL11p016779 Quercus lobata HOM05D000067 ORTHO05D000097 1.6e-07 59.7 79 41.8
CiPaw.12G125200 Carya illinoinensis HOM05D000067 ORTHO05D000097 2.1e-07 59.3 79 40.5
Gorai.002G080500 Gossypium raimondii HOM05D000067 ORTHO05D000097 2.1e-07 59.3 79 41.8
QL11p017235 Quercus lobata HOM05D000067 ORTHO05D000097 2.1e-07 59.3 79 40.5
GSVIVG01014175001 Vitis vinifera HOM05D000067 ORTHO05D000097 2.1e-07 59.3 73 42.5
FAN16G0612 Fragaria x ananassa HOM05D000067 ORTHO05D000097 2.7e-07 58.9 79 44.3
Potri.015G085500 Populus trichocarpa HOM05D000067 ORTHO05D000097 2.7e-07 58.9 79 41.8
SalBow3G3734 Salvia bowleyana HOM05D000067 ORTHO05D000097 2.7e-07 58.9 76 44.7
FvH4_3g21560 Fragaria vesca HOM05D000067 ORTHO05D000097 3.5e-07 58.5 76 44.7
Gohir.A01G072700 Gossypium hirsutum HOM05D000067 ORTHO05D000097 3.5e-07 58.5 79 41.8
Gorai.002G080300 Gossypium raimondii HOM05D000067 ORTHO05D000097 4.6e-07 58.2 79 41.8
Thecc.07G057300 Theobroma cacao HOM05D000067 ORTHO05D000097 4.6e-07 58.2 79 41.8
GSVIVG01014325001 Vitis vinifera HOM05D000067 ORTHO05D000097 4.6e-07 58.2 79 39.2
GSVIVG01036322001 Vitis vinifera HOM05D000067 ORTHO05D000097 4.6e-07 58.2 79 39.2
CAN.G1258.2 Capsicum annuum HOM05D000067 ORTHO05D000097 6.0e-07 57.8 78 42.3
ECA247G2726 Erigeron canadensis HOM05D000067 ORTHO05D000097 6.0e-07 57.8 78 42.3
Sc03g0009280 Simmondsia chinensis HOM05D000067 ORTHO05D000097 6.0e-07 57.8 78 41.0
SGA_v2.0_scaffold70G23564 Striga asiatica HOM05D000067 ORTHO05D000097 6.0e-07 57.8 77 41.6
Gohir.D13G147100 Gossypium hirsutum HOM05D000067 ORTHO05D000097 7.8e-07 57.4 79 40.5
HanXRQChr10g0300521 Helianthus annuus HOM05D000067 ORTHO05D000097 7.8e-07 57.4 79 39.2
Hma1.2p1_0090F.1_g045540 Hydrangea macrophylla HOM05D000067 ORTHO05D000097 7.8e-07 57.4 82 35.4
Lsat_1_v5_gn_9_20320 Lactuca sativa HOM05D000067 ORTHO05D000097 7.8e-07 57.4 79 40.5
RcHm_v2.0_Chr5g0065101 Rosa chinensis HOM05D000067 ORTHO05D000097 7.8e-07 57.4 80 42.5
CAN.G531.7 Capsicum annuum HOM05D000067 ORTHO05D000097 1.0e-06 57.0 77 45.5
Dinv11141 Davidia involucrata HOM05D000067 ORTHO05D000097 1.0e-06 57.0 79 43.0
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 1.0e-06 57.0 79 38.0
Peaxi162Scf00007g00432 Petunia axillaris HOM05D000067 ORTHO05D000097 1.0e-06 57.0 88 38.6
RcHm_v2.0_Chr5g0037011 Rosa chinensis HOM05D000067 ORTHO05D000097 1.0e-06 57.0 76 43.4
Cc00_g06390 Coffea canephora HOM05D000067 ORTHO05D000097 1.3e-06 56.6 77 41.6
Cc00_g06420 Coffea canephora HOM05D000067 ORTHO05D000097 1.3e-06 56.6 77 41.6
Sabra15G0108700 Salix brachista HOM05D000067 ORTHO05D000097 1.3e-06 56.6 79 40.5
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 1.3e-06 56.6 79 38.0
Duzib268G0702 Durio zibethinus HOM05D000067 ORTHO05D000097 1.7e-06 56.2 90 41.1
Glyma.12G138800 Glycine max HOM05D000067 ORTHO05D000097 1.7e-06 56.2 80 40.0
Potri.015G032100 Populus trichocarpa HOM05D000067 ORTHO05D000097 1.7e-06 56.2 79 39.2
Thecc.07G056500 Theobroma cacao HOM05D000067 ORTHO05D000097 1.7e-06 56.2 79 39.2
TAR624G1254 Trochodendron aralioides HOM05D000067 ORTHO05D000097 1.7e-06 56.2 76 39.5
CiPaw.10G053600 Carya illinoinensis HOM05D000067 ORTHO05D000097 2.3e-06 55.8 79 40.5
FvH4_1g04000 Fragaria vesca HOM05D000067 ORTHO05D000097 2.3e-06 55.8 79 41.8
FAN19G3103 Fragaria x ananassa HOM05D000067 ORTHO05D000097 2.3e-06 55.8 79 41.8
FAN26G0559 Fragaria x ananassa HOM05D000067 ORTHO05D000097 2.3e-06 55.8 79 41.8
Lsat_1_v5_gn_6_21340 Lactuca sativa HOM05D000067 ORTHO05D000097 2.3e-06 55.8 85 35.3
Lsat_1_v5_gn_6_58980 Lactuca sativa HOM05D000067 ORTHO05D000097 2.3e-06 55.8 73 38.4
Peaxi162Scf00258g00438 Petunia axillaris HOM05D000067 ORTHO05D000097 2.3e-06 55.8 72 38.9
Rhsim06G0189200 Rhododendron simsii HOM05D000067 ORTHO05D000097 2.3e-06 55.8 96 34.4
vmacro23066 Vaccinium macrocarpon HOM05D000067 ORTHO05D000097 2.3e-06 55.8 79 38.0
GSVIVG01014174001 Vitis vinifera HOM05D000067 ORTHO05D000097 2.3e-06 55.8 68 45.6
GSVIVG01014565001 Vitis vinifera HOM05D000067 ORTHO05D000097 2.3e-06 55.8 79 40.5
Atru.chr2.2478 Acer truncatum HOM05D000067 ORTHO05D000097 3.0e-06 55.5 79 34.2
CAN.G377.20 Capsicum annuum HOM05D000067 ORTHO05D000097 3.0e-06 55.5 88 34.1
COL.COLO4_09458 Corchorus olitorius HOM05D000067 ORTHO05D000097 3.0e-06 55.5 102 37.3
Nn6g34406 Nelumbo nucifera HOM05D000067 ORTHO05D000097 3.0e-06 55.5 79 38.0
Peaxi162Scf00769g00115 Petunia axillaris HOM05D000067 ORTHO05D000097 3.0e-06 55.5 68 45.6
CSS0019833 Camellia sinensis var. sinensis HOM05D000067 ORTHO05D000097 3.9e-06 55.1 79 36.7
Cc04_g16390 Coffea canephora HOM05D000067 ORTHO05D000097 3.9e-06 55.1 71 42.3
Gohir.D11G293800 Gossypium hirsutum HOM05D000067 ORTHO05D000097 3.9e-06 55.1 73 41.1
Lsat_1_v5_gn_6_59741 Lactuca sativa HOM05D000067 ORTHO05D000097 3.9e-06 55.1 73 39.7
Lj3g0026417 Lotus japonicus HOM05D000067 ORTHO05D000097 3.9e-06 55.1 79 40.5
Oeu017974.2 Olea europaea HOM05D000067 ORTHO05D000097 3.9e-06 55.1 99 29.3
RcHm_v2.0_Chr6g0274881 Rosa chinensis HOM05D000067 ORTHO05D000097 3.9e-06 55.1 69 44.9
SalBow4G0250 Salvia bowleyana HOM05D000067 ORTHO05D000097 3.9e-06 55.1 76 44.7
GSVIVG01036366001 Vitis vinifera HOM05D000067 ORTHO05D000097 3.9e-06 55.1 76 39.5
GSVIVG01036370001 Vitis vinifera HOM05D000067 ORTHO05D000097 3.9e-06 55.1 77 40.3
GSVIVG01036372001 Vitis vinifera HOM05D000067 ORTHO05D000097 3.9e-06 55.1 76 39.5
CSS0000932 Camellia sinensis var. sinensis HOM05D000067 ORTHO05D000097 5.1e-06 54.7 76 38.2
Gohir.A11G280850 Gossypium hirsutum HOM05D000067 ORTHO05D000097 5.1e-06 54.7 73 41.1
RcHm_v2.0_Chr5g0036921 Rosa chinensis HOM05D000067 ORTHO05D000097 5.1e-06 54.7 80 41.2
Sc03g0009230 Simmondsia chinensis HOM05D000067 ORTHO05D000097 5.1e-06 54.7 80 36.2
Sc03g0009330 Simmondsia chinensis HOM05D000067 ORTHO05D000097 5.1e-06 54.7 74 41.9
SGA_v2.0_scaffold45G17049 Striga asiatica HOM05D000067 ORTHO05D000097 5.1e-06 54.7 99 32.3
CiPaw.11G181200 Carya illinoinensis HOM05D000067 ORTHO05D000097 6.6e-06 54.3 73 47.9
CiPaw.11G181700 Carya illinoinensis HOM05D000067 ORTHO05D000097 6.6e-06 54.3 73 47.9
CiPaw.11G182000 Carya illinoinensis HOM05D000067 ORTHO05D000097 6.6e-06 54.3 73 47.9
Lsat_1_v5_gn_6_58961 Lactuca sativa HOM05D000067 ORTHO05D000097 6.6e-06 54.3 73 37.0
Manes.16G054700 Manihot esculenta HOM05D000067 ORTHO05D000097 6.6e-06 54.3 79 38.0
Sc03g0009310 Simmondsia chinensis HOM05D000067 ORTHO05D000097 6.6e-06 54.3 74 40.5
TWI39G0788 Tripterygium wilfordii HOM05D000067 ORTHO05D000097 6.6e-06 54.3 79 34.2
VMungo1127G1885 Vigna mungo HOM05D000067 ORTHO05D000097 6.6e-06 54.3 79 43.0
CAN.G1155.10 Capsicum annuum HOM05D000067 ORTHO05D000097 8.6e-06 53.9 78 38.5
CAN.G1507.5 Capsicum annuum HOM05D000067 ORTHO05D000097 8.6e-06 53.9 88 34.1
Gohir.A13G142300 Gossypium hirsutum HOM05D000067 ORTHO05D000097 8.6e-06 53.9 79 39.2
Gohir.A13G142400 Gossypium hirsutum HOM05D000067 ORTHO05D000097 8.6e-06 53.9 79 39.2
Gohir.D13G147000 Gossypium hirsutum HOM05D000067 ORTHO05D000097 8.6e-06 53.9 79 39.2
Gorai.013G164900 Gossypium raimondii HOM05D000067 ORTHO05D000097 8.6e-06 53.9 79 39.2
HanXRQChr09g0245261 Helianthus annuus HOM05D000067 ORTHO05D000097 8.6e-06 53.9 79 34.2
Lsat_1_v5_gn_0_8301 Lactuca sativa HOM05D000067 ORTHO05D000097 8.6e-06 53.9 73 38.4
Oeu053386.1 Olea europaea HOM05D000067 ORTHO05D000097 8.6e-06 53.9 77 45.5
Phvul.011G142700 Phaseolus vulgaris HOM05D000067 ORTHO05D000097 8.6e-06 53.9 79 41.8
SalBow3G1384 Salvia bowleyana HOM05D000067 ORTHO05D000097 8.6e-06 53.9 76 42.1
TAR624G1365 Trochodendron aralioides HOM05D000067 ORTHO05D000097 8.6e-06 53.9 79 38.0


User provided reference genes

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