Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 3.0e-207 724.9 360 100.0
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 1.4e-127 460.3 359 69.4
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 1.2e-107 394.0 200 96.0
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 9.8e-94 347.8 180 92.2
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 7.1e-92 341.7 200 82.5
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 7.3e-81 305.1 200 75.5
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 1.2e-80 304.3 200 75.0
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 3.1e-79 299.7 153 96.1
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 8.7e-74 281.6 153 90.8
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 8.7e-74 281.6 153 90.8
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 3.3e-57 226.5 187 59.9
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 5.6e-57 225.7 181 61.3
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 1.1e-55 221.5 183 59.0
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.5e-54 217.6 257 49.0
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 2.6e-54 216.9 189 57.1
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 3.4e-54 216.5 192 55.7
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 3.4e-54 216.5 189 56.1
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 1.0e-53 214.9 189 56.1
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 1.7e-53 214.2 164 61.6
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 1.7e-53 214.2 164 61.6
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 2.2e-53 213.8 164 61.0
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 2.2e-53 213.8 170 60.6
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 2.9e-53 213.4 174 59.2
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 2.9e-53 213.4 261 45.6
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 2.9e-53 213.4 164 61.6
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 2.9e-53 213.4 186 55.9
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 3.8e-53 213.0 164 61.0
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 3.8e-53 213.0 170 60.6
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 4.9e-53 212.6 189 56.1
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 4.9e-53 212.6 164 61.0
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 4.9e-53 212.6 164 60.4
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 6.5e-53 212.2 164 60.4
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 6.5e-53 212.2 164 60.4
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 6.5e-53 212.2 169 60.4
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 6.5e-53 212.2 164 61.0
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 6.5e-53 212.2 164 61.0
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 6.5e-53 212.2 164 61.0
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 6.5e-53 212.2 164 61.6
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 6.5e-53 212.2 164 61.6
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 8.4e-53 211.8 190 56.8
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 8.4e-53 211.8 189 55.0
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 8.4e-53 211.8 189 55.0
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 8.4e-53 211.8 164 61.0
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 1.1e-52 211.5 164 61.0
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 1.1e-52 211.5 164 60.4
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 1.1e-52 211.5 164 60.4
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 1.1e-52 211.5 174 58.6
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 1.1e-52 211.5 164 60.4
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 1.1e-52 211.5 164 60.4
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 1.1e-52 211.5 164 60.4
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.1e-52 211.5 164 61.0
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.1e-52 211.5 192 55.2
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.1e-52 211.5 192 55.2
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 1.1e-52 211.5 192 54.7
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 1.4e-52 211.1 164 59.1
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 1.4e-52 211.1 164 60.4
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 1.4e-52 211.1 194 54.6
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 1.4e-52 211.1 164 60.4
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.4e-52 211.1 170 60.0
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 1.9e-52 210.7 164 60.4
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 1.9e-52 210.7 164 60.4
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.9e-52 210.7 164 60.4
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.9e-52 210.7 164 60.4
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.9e-52 210.7 164 60.4
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.9e-52 210.7 164 60.4
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.9e-52 210.7 164 60.4
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.9e-52 210.7 189 54.5
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 2.5e-52 210.3 164 60.4
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 2.5e-52 210.3 164 59.8
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 2.5e-52 210.3 164 61.0
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 2.5e-52 210.3 170 58.8
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 3.2e-52 209.9 192 54.7
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 3.2e-52 209.9 174 59.2
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 3.2e-52 209.9 184 56.0
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 4.2e-52 209.5 164 59.8
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 4.2e-52 209.5 170 59.4
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 5.5e-52 209.1 190 54.7
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 5.5e-52 209.1 164 59.8
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 5.5e-52 209.1 164 59.8
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 7.1e-52 208.8 237 47.3
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.1e-52 208.8 200 52.5
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 7.1e-52 208.8 200 52.5
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 9.3e-52 208.4 164 59.8
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 9.3e-52 208.4 172 59.3
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 9.3e-52 208.4 164 58.5
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 1.2e-51 208.0 164 61.0
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 1.2e-51 208.0 170 58.8
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 1.6e-51 207.6 164 59.1
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 1.6e-51 207.6 164 61.0
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 1.6e-51 207.6 174 58.6
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 1.6e-51 207.6 164 59.1
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.6e-51 207.6 164 60.4
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 2.1e-51 207.2 164 60.4
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 2.1e-51 207.2 190 54.7
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 2.1e-51 207.2 190 54.7
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 2.1e-51 207.2 199 53.3
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 2.7e-51 206.8 192 53.6
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 2.7e-51 206.8 190 54.7
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 3.5e-51 206.5 164 60.4
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 4.6e-51 206.1 164 59.1
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 6.0e-51 205.7 229 49.8
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 6.0e-51 205.7 188 53.7
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 6.0e-51 205.7 188 53.7
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 7.9e-51 205.3 164 57.3
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 7.9e-51 205.3 279 43.0
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 1.0e-50 204.9 208 51.0
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 1.0e-50 204.9 164 58.5
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.0e-50 204.9 163 58.3
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.3e-50 204.5 190 53.2
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.3e-50 204.5 190 53.2
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.3e-50 204.5 228 48.2
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.8e-50 204.1 232 47.8
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 1.8e-50 204.1 172 57.0
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 3.0e-50 203.4 164 59.1
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.0e-50 203.4 232 47.8
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 3.0e-50 203.4 164 57.9
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 3.0e-50 203.4 164 57.3
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 3.0e-50 203.4 164 57.9
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 3.0e-50 203.4 164 57.3
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 3.9e-50 203.0 164 57.9
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 5.1e-50 202.6 188 54.8
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 6.7e-50 202.2 216 49.5
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 6.7e-50 202.2 193 52.3
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 6.7e-50 202.2 183 54.6
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 1.1e-49 201.4 206 50.5
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 1.5e-49 201.1 170 57.1
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 1.9e-49 200.7 164 57.9
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 2.5e-49 200.3 186 51.6
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 4.3e-49 199.5 164 57.3
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 5.7e-49 199.1 231 48.1
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 7.4e-49 198.7 190 52.6
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 7.4e-49 198.7 164 57.9
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 7.4e-49 198.7 164 57.9
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 7.4e-49 198.7 164 57.9
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 1.3e-48 198.0 164 57.9
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 1.3e-48 198.0 164 57.3
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 1.3e-48 198.0 154 60.4
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 3.7e-48 196.4 164 57.3
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 8.2e-48 195.3 167 58.7
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 1.4e-47 194.5 160 56.9
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 1.4e-47 194.5 162 56.2
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 3.1e-47 193.4 167 55.7
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 4.1e-47 193.0 167 55.7
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 6.9e-47 192.2 164 53.7
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 6.9e-47 192.2 167 57.5
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 9.0e-47 191.8 154 57.1
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 2.0e-46 190.7 178 51.1
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 1.7e-45 187.6 164 56.1
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 5.0e-45 186.0 167 52.7
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 1.1e-44 184.9 153 60.8
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 5.5e-44 182.6 171 53.2
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.6e-43 181.0 206 47.1
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.6e-43 181.0 206 47.1
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 2.1e-43 180.6 228 44.7
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 3.5e-43 179.9 188 48.9
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 3.5e-43 179.9 191 50.8
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 6.1e-43 179.1 169 56.2
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 1.3e-42 177.9 242 43.8
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 8.7e-42 175.3 166 51.2
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.5e-41 174.5 125 62.4
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 1.3e-40 171.4 154 55.8
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 2.4e-39 167.2 169 50.9
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 1.2e-38 164.9 169 50.3
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 5.0e-37 159.5 154 53.2
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 2.1e-35 154.1 132 55.3
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 2.7e-35 153.7 131 58.8
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 7.4e-33 145.6 120 62.5
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 2.8e-32 143.7 116 60.3
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 1.4e-31 141.4 169 47.3
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 4.5e-30 136.3 164 44.5
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 1.1e-28 131.7 93 63.4
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.7e-21 107.8 136 45.6
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.1e-19 100.9 136 43.4
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 4.7e-19 99.8 67 61.2
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 4.5e-14 83.2 104 41.3
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 7.7e-14 82.4 154 33.1
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 4.7e-11 73.2 113 35.4
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 6.1e-11 72.8 221 29.9


User provided reference genes

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