Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 3.2e-192 674.9 332 100.0
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 2.9e-177 625.2 334 92.8
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 4.9e-164 581.3 306 95.4
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 6.2e-159 564.3 332 86.4
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 3.7e-156 555.1 337 82.5
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 4.1e-147 525.0 340 78.8
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 4.0e-126 455.3 278 82.0
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.0e-105 387.5 278 69.8
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 3.9e-105 385.6 278 69.4
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 3.4e-101 372.5 278 66.5
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 5.0e-100 368.6 289 60.9
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 1.1e-99 367.5 278 64.4
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 7.2e-99 364.8 280 65.0
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 2.3e-97 359.8 278 64.7
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 1.5e-96 357.1 281 63.7
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 5.7e-96 355.1 278 65.5
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 7.4e-96 354.8 277 62.5
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 7.4e-96 354.8 283 62.2
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 1.7e-95 353.6 280 63.9
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 1.7e-95 353.6 276 62.3
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 2.2e-95 353.2 234 70.9
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 1.8e-94 350.1 281 62.6
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 2.4e-94 349.7 291 61.9
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 5.3e-94 348.6 277 64.3
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 1.7e-92 343.6 278 62.2
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 3.8e-92 342.4 376 51.1
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 1.4e-91 340.5 277 61.0
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 3.2e-91 339.3 282 62.8
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 4.2e-91 339.0 274 59.5
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 5.5e-91 338.6 282 59.6
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 7.2e-91 338.2 278 59.4
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 9.4e-91 337.8 280 64.6
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 3.6e-90 335.9 284 61.3
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 4.7e-90 335.5 278 61.2
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 8.0e-90 334.7 283 59.7
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 3.9e-89 332.4 274 59.5
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 5.2e-89 332.0 279 58.8
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 8.8e-89 331.3 281 58.7
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 2.0e-88 330.1 279 57.7
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 3.3e-88 329.3 281 58.4
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 3.3e-88 329.3 282 62.1
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 4.4e-88 328.9 283 58.0
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 5.7e-88 328.6 281 58.0
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 7.4e-88 328.2 278 59.7
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 9.7e-88 327.8 283 57.2
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 9.7e-88 327.8 278 59.0
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 9.7e-88 327.8 274 58.8
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 1.3e-87 327.4 287 56.4
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 2.2e-87 326.6 280 58.2
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 2.8e-87 326.2 278 58.6
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 1.1e-86 324.3 280 58.9
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 1.1e-86 324.3 280 58.9
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 3.1e-86 322.8 281 58.0
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 3.1e-86 322.8 281 60.1
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 4.1e-86 322.4 299 53.5
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 5.3e-86 322.0 280 58.9
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 5.3e-86 322.0 277 57.0
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 9.1e-86 321.2 281 59.1
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 1.6e-85 320.5 277 58.5
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 2.6e-85 319.7 279 59.1
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 4.5e-85 318.9 306 52.0
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 5.9e-85 318.5 280 58.6
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 1.3e-84 317.4 280 57.5
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 2.2e-84 316.6 288 56.2
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 6.5e-84 315.1 280 57.9
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 8.5e-84 314.7 280 57.9
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 1.9e-83 313.5 279 57.0
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 2.5e-83 313.2 280 57.1
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 9.4e-83 311.2 272 58.5
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 1.2e-82 310.8 280 57.1
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 2.7e-82 309.7 280 56.1
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 6.1e-82 308.5 280 57.5
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 8.8e-81 304.7 361 45.7
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 2.8e-79 299.7 256 57.4
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 2.8e-79 299.7 204 65.2
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 3.7e-79 299.3 283 56.9
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 6.3e-79 298.5 293 52.6
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 1.2e-77 294.3 269 56.5
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 2.0e-77 293.5 279 54.8
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 4.2e-75 285.8 293 51.5
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 5.5e-75 285.4 498 37.6
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 8.8e-73 278.1 250 60.0
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 3.7e-71 272.7 250 55.6
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 4.1e-70 269.2 246 54.5
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 1.3e-68 264.2 205 61.5
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 1.9e-67 260.4 158 74.7
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 2.1e-66 256.9 277 49.8
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 2.8e-66 256.5 280 46.4
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 4.0e-65 252.7 266 51.9
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 7.3e-51 205.3 217 55.8
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 2.8e-50 203.4 184 58.7
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 3.6e-50 203.0 209 44.5
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 8.0e-50 201.8 212 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 2.2e-47 193.7 176 48.3
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 1.2e-45 188.0 253 37.9
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 6.0e-45 185.7 190 53.2
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 5.6e-43 179.1 260 34.2
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 8.1e-42 175.3 110 70.0
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 1.1e-35 154.8 185 48.1
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 4.4e-32 142.9 107 59.8
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 7.8e-29 132.1 200 39.0
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 1.7e-23 114.4 95 56.8
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 2.2e-23 114.0 70 70.0
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 1.9e-22 110.9 177 39.0
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 4.2e-22 109.8 147 46.3
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 1.7e-20 104.4 86 57.0
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 3.1e-17 93.6 68 54.4
CBR_g23991 Chara braunii HOM05D003201 ORTHO05D008914 2.1e-10 70.9 41 65.9
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 1.4e-09 68.2 325 21.2
Phvul.009G102700 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 7.6e-08 62.4 285 23.9


User provided reference genes

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