Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g007360 Solanum pennellii HOM05D007541 ORTHO05D009404 4.1e-53 211.1 103 100.0
Sopen05g007350 Solanum pennellii HOM05D007541 ORTHO05D009404 3.6e-25 118.2 98 68.4
Gorai.005G144400 Gossypium raimondii HOM05D007541 ORTHO05D009404 4.9e-14 81.3 100 46.0
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 4.2e-13 78.2 100 45.0
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 2.7e-12 75.5 100 45.0
Nitab4.5_0004304g0050 Nicotiana tabacum HOM05D007541 ORTHO05D009404 2.7e-12 75.5 79 54.4
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 7.8e-12 73.9 61 62.3
Hma1.2p1_0354F.1_g133580 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 1.0e-11 73.6 102 44.1
CiPaw.06G090800 Carya illinoinensis HOM05D007541 ORTHO05D009404 2.3e-11 72.4 121 41.3
Lalb_Chr17g0341081 Lupinus albus HOM05D007541 ORTHO05D009404 3.0e-11 72.0 95 46.3
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 5.1e-11 71.2 112 39.3
Duzib268G0968 Durio zibethinus HOM05D007541 ORTHO05D009404 6.6e-11 70.9 85 47.1
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 1.1e-10 70.1 97 41.2
Duzib248G1062 Durio zibethinus HOM05D007541 ORTHO05D009404 3.3e-10 68.6 52 63.5
Thecc.02G334900 Theobroma cacao HOM05D007541 ORTHO05D009404 3.3e-10 68.6 56 60.7
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 5.6e-10 67.8 76 48.7
QL03p070744 Quercus lobata HOM05D007541 ORTHO05D009404 9.6e-10 67.0 53 58.5
QL03p071059 Quercus lobata HOM05D007541 ORTHO05D009404 1.3e-09 66.6 53 58.5
Lalb_Chr05g0220081 Lupinus albus HOM05D007541 ORTHO05D009404 6.2e-09 64.3 90 42.2
Nn3g17389 Nelumbo nucifera HOM05D007541 ORTHO05D009404 8.1e-09 63.9 110 38.2
FAN17G1776 Fragaria x ananassa HOM05D007541 ORTHO05D009404 1.1e-08 63.5 47 66.0
TPR.G741 Trifolium pratense HOM05D007541 ORTHO05D009404 1.1e-08 63.5 78 44.9
Manes.01G029500 Manihot esculenta HOM05D007541 ORTHO05D009404 1.4e-08 63.2 90 38.9
TPR.G34056 Trifolium pratense HOM05D007541 ORTHO05D009404 1.8e-08 62.8 85 40.0
PGR102G1405 Punica granatum HOM05D007541 ORTHO05D009404 2.4e-08 62.4 66 51.5
Sabra10G0122200 Salix brachista HOM05D007541 ORTHO05D009404 2.4e-08 62.4 48 68.8
TWI79G0012 Tripterygium wilfordii HOM05D007541 ORTHO05D009404 2.4e-08 62.4 97 41.2
Aa31LG7G8500 Aethionema arabicum HOM05D001658 ORTHO05D001406 3.1e-08 62.0 47 66.0
AL2G28420 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 4.0e-08 61.6 62 53.2
Migut.L01210 Erythranthe guttata HOM05D007541 ORTHO05D009404 4.0e-08 61.6 45 71.1
CARHR025370 Cardamine hirsuta HOM05D007541 ORTHO05D009404 5.3e-08 61.2 51 60.8
AL1G39130 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 6.9e-08 60.8 51 62.7
Carub.0002s1591 Capsella rubella HOM05D007541 ORTHO05D009404 6.9e-08 60.8 62 53.2
A08p27410 Brassica napus HOM05D007541 ORTHO05D009404 9.0e-08 60.5 51 60.8
BraA08t34682Z Brassica rapa HOM05D007541 ORTHO05D009404 9.0e-08 60.5 51 60.8
FvH4_4g30410 Fragaria vesca HOM05D007541 ORTHO05D009404 9.0e-08 60.5 114 38.6
RcHm_v2.0_Chr4g0438701 Rosa chinensis HOM05D007541 ORTHO05D009404 9.0e-08 60.5 47 63.8
AT1G26600 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 1.2e-07 60.1 51 62.7
BcaC01g01749 Brassica carinata HOM05D007541 ORTHO05D009404 1.2e-07 60.1 47 63.8
C03p72330 Brassica napus HOM05D007541 ORTHO05D009404 1.2e-07 60.1 47 63.8
BolC3t19527H Brassica oleracea HOM05D007541 ORTHO05D009404 1.2e-07 60.1 47 63.8
BraA07t29071Z Brassica rapa HOM05D007541 ORTHO05D009404 1.2e-07 60.1 48 62.5
MELO3C012140.2 Cucumis melo HOM05D007541 ORTHO05D009404 1.2e-07 60.1 54 57.4
Thhalv10009109m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 1.2e-07 60.1 49 61.2
Lj4g0006658 Lotus japonicus HOM05D007541 ORTHO05D009404 1.2e-07 60.1 99 36.4
AT1G69320 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 1.5e-07 59.7 62 51.6
A07p13000 Brassica napus HOM05D007541 ORTHO05D009404 1.5e-07 59.7 50 62.0
Carub.0001s2443 Capsella rubella HOM05D007541 ORTHO05D009404 1.5e-07 59.7 51 62.7
CARHR062200 Cardamine hirsuta HOM05D007541 ORTHO05D009404 1.5e-07 59.7 62 51.6
Migut.D01674 Erythranthe guttata HOM05D007541 ORTHO05D009404 1.5e-07 59.7 30 90.0
FAN12G3046 Fragaria x ananassa HOM05D007541 ORTHO05D009404 1.5e-07 59.7 115 38.3
Lj2g0027708 Lotus japonicus HOM05D007541 ORTHO05D009404 1.5e-07 59.7 92 43.5
BcaB03g14076 Brassica carinata HOM05D007541 ORTHO05D009404 2.0e-07 59.3 51 62.7
BcaB05g21930 Brassica carinata HOM05D007541 ORTHO05D009404 2.0e-07 59.3 51 62.7
DCAR_007184 Daucus carota HOM05D007541 ORTHO05D009404 2.0e-07 59.3 34 76.5
FAN22G1195 Fragaria x ananassa HOM05D007541 ORTHO05D009404 2.0e-07 59.3 114 37.7
Hma1.2p1_0322F.1_g124880 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 2.0e-07 59.3 44 68.2
Lsat_1_v5_gn_8_48181 Lactuca sativa HOM05D007541 ORTHO05D009404 2.0e-07 59.3 127 38.6
Potri.010G160600 Populus trichocarpa HOM05D007541 ORTHO05D009404 2.6e-07 58.9 112 37.5
C07p19450 Brassica napus HOM05D007541 ORTHO05D009404 4.5e-07 58.2 50 62.0
BolC7t42463H Brassica oleracea HOM05D007541 ORTHO05D009404 4.5e-07 58.2 50 62.0
CsaV3_5G033190 Cucumis sativus L. HOM05D007541 ORTHO05D009404 4.5e-07 58.2 116 39.7
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 5.8e-07 57.8 33 78.8
Lalb_Chr10g0098651 Lupinus albus HOM05D007541 ORTHO05D009404 5.8e-07 57.8 84 44.0
THA.LOC104822896 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 5.8e-07 57.8 66 50.0
A09p39990 Brassica napus HOM05D007541 ORTHO05D009404 7.6e-07 57.4 109 35.8
BraA09t39497Z Brassica rapa HOM05D007541 ORTHO05D009404 7.6e-07 57.4 109 35.8
Gorai.013G091800 Gossypium raimondii HOM05D007541 ORTHO05D009404 9.9e-07 57.0 93 41.9
Lsat_1_v5_gn_4_12120 Lactuca sativa HOM05D007541 ORTHO05D009404 9.9e-07 57.0 65 52.3
Manes.05G108300 Manihot esculenta HOM05D007541 ORTHO05D009404 9.9e-07 57.0 54 55.6
BcaB03g11998 Brassica carinata HOM05D007541 ORTHO05D009404 1.7e-06 56.2 53 56.6
BcaC05g26408 Brassica carinata HOM05D007541 ORTHO05D009404 1.7e-06 56.2 51 58.8
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.7e-06 56.2 89 41.6
Lalb_Chr04g0255771 Lupinus albus HOM05D007541 ORTHO05D009404 1.7e-06 56.2 86 40.7
THA.LOC104805033 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 1.7e-06 56.2 44 65.9
Ciclev10033671m.g Citrus clementina HOM05D007541 ORTHO05D009404 2.2e-06 55.8 62 51.6
Prupe.1G283100 Prunus persica HOM05D007541 ORTHO05D009404 2.2e-06 55.8 152 34.2
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 2.9e-06 55.5 42 64.3
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 2.9e-06 55.5 35 74.3
TPR.G24449 Trifolium pratense HOM05D007541 ORTHO05D009404 2.9e-06 55.5 48 64.6
BcaC05g26410 Brassica carinata HOM05D007541 ORTHO05D009404 3.8e-06 55.1 62 48.4
BolC5t31179H Brassica oleracea HOM05D007541 ORTHO05D009404 3.8e-06 55.1 62 48.4
Thhalv10019344m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 3.8e-06 55.1 103 35.9
Potri.008G093500 Populus trichocarpa HOM05D007541 ORTHO05D009404 3.8e-06 55.1 49 61.2
Glyma.01G056400 Glycine max HOM05D007541 ORTHO05D009404 4.9e-06 54.7 47 61.7
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 4.9e-06 54.7 109 33.0
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 6.4e-06 54.3 36 72.2
DCAR_027454 Daucus carota HOM05D007541 ORTHO05D009404 6.4e-06 54.3 112 36.6
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 6.4e-06 54.3 41 61.0
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 6.4e-06 54.3 93 38.7
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 8.4e-06 53.9 84 40.5
C05p24450 Brassica napus HOM05D007541 ORTHO05D009404 8.4e-06 53.9 64 50.0
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 8.4e-06 53.9 35 71.4
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 8.4e-06 53.9 45 57.8


User provided reference genes

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