Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 7.4e-168 594.0 338 100.0
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 1.3e-159 566.6 346 95.7
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 1.1e-152 543.5 348 90.8
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 5.0e-124 448.4 354 72.3
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 7.5e-120 434.5 348 79.3
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.3e-119 433.7 353 72.0
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 6.4e-103 378.3 350 66.0
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 3.6e-98 362.5 298 75.5
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 6.2e-90 335.1 345 60.0
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 3.1e-89 332.8 341 60.1
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 6.4e-87 325.1 341 58.7
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 1.9e-86 323.6 338 58.9
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 4.6e-85 318.9 322 60.2
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 2.1e-82 310.1 341 56.6
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 1.4e-81 307.4 347 54.8
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 2.4e-81 306.6 340 55.9
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 3.1e-81 306.2 342 57.9
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 4.0e-81 305.8 315 59.4
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 4.0e-81 305.8 344 55.8
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 3.8e-79 299.3 320 58.4
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 1.6e-77 293.9 340 59.7
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 2.7e-77 293.1 344 53.5
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 4.6e-77 292.4 325 55.7
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 7.9e-77 291.6 342 53.2
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 1.0e-76 291.2 341 55.4
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 1.0e-76 291.2 299 56.5
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 3.9e-76 289.3 343 52.8
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 6.7e-76 288.5 342 54.7
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 8.7e-76 288.1 358 54.2
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 1.5e-75 287.3 295 57.6
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 4.3e-75 285.8 347 53.6
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 9.6e-75 284.6 340 52.6
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 1.1e-73 281.2 340 50.6
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.8e-73 280.4 331 53.5
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 3.1e-73 279.6 331 53.5
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 4.0e-73 279.3 347 52.7
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 5.3e-73 278.9 322 54.0
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 6.9e-73 278.5 353 53.8
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 1.5e-72 277.3 336 50.3
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 2.0e-72 276.9 347 50.1
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 2.2e-71 273.5 338 50.6
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 2.2e-71 273.5 337 52.2
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 3.8e-71 272.7 337 50.1
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 8.4e-71 271.6 340 51.2
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 1.1e-70 271.2 330 50.6
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 1.1e-70 271.2 344 58.7
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 1.9e-70 270.4 339 49.9
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 2.4e-70 270.0 344 49.4
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 3.2e-70 269.6 346 50.0
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 3.2e-70 269.6 336 55.7
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 1.6e-69 267.3 353 58.9
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 2.1e-69 266.9 340 52.4
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 4.6e-69 265.8 325 51.1
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 4.6e-69 265.8 338 50.3
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 4.6e-69 265.8 351 49.6
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 6.0e-69 265.4 330 50.3
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 5.1e-68 262.3 337 49.6
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 5.1e-68 262.3 355 48.5
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 8.7e-68 261.5 351 49.6
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 1.1e-67 261.2 329 56.2
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 1.9e-67 260.4 351 50.1
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 1.9e-67 260.4 339 49.6
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.9e-67 260.4 323 49.2
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 1.9e-67 260.4 393 46.1
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 1.9e-67 260.4 337 54.0
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 1.9e-67 260.4 364 48.1
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 1.3e-66 257.7 328 54.9
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 1.3e-66 257.7 354 51.4
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 4.8e-66 255.8 328 50.3
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 6.2e-66 255.4 329 50.8
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 8.2e-66 255.0 344 49.4
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 1.1e-65 254.6 362 48.9
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 1.4e-65 254.2 336 50.3
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 1.4e-65 254.2 371 48.5
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 1.4e-65 254.2 359 49.3
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 2.4e-65 253.4 230 62.2
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 3.1e-65 253.1 347 48.7
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 6.9e-65 251.9 213 66.2
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 3.4e-64 249.6 324 50.0
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 4.5e-64 249.2 342 49.7
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 1.9e-62 243.8 340 55.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 9.3e-62 241.5 292 50.7
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 1.6e-61 240.7 336 50.3
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 2.1e-61 240.4 207 60.4
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.7e-61 240.0 345 49.3
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 3.5e-61 239.6 329 48.3
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 2.3e-60 236.9 268 53.0
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 5.1e-60 235.7 347 54.2
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 6.7e-60 235.3 317 50.8
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 2.5e-59 233.4 230 56.5
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 4.3e-59 232.6 335 46.0
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 4.3e-59 232.6 335 46.0
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 4.3e-59 232.6 347 53.6
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 4.3e-59 232.6 331 46.5
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 5.7e-59 232.3 346 51.2
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 2.1e-58 230.3 341 45.7
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 2.8e-58 229.9 221 59.7
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 3.7e-58 229.6 327 46.8
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 6.9e-57 225.3 305 53.4
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.2e-56 224.6 347 50.7
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 2.9e-55 219.9 168 67.9
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 3.8e-55 219.5 327 46.5
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 5.0e-55 219.2 371 49.1
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 6.5e-55 218.8 323 48.0
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 7.2e-54 215.3 243 55.1
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.6e-53 214.2 320 48.1
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 2.7e-53 213.4 301 47.2
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 3.6e-53 213.0 321 44.2
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 7.9e-53 211.8 370 49.2
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 2.4e-49 200.3 269 53.2
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 4.5e-48 196.1 155 68.4
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 1.0e-47 194.9 269 52.0
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 3.8e-47 193.0 521 39.2
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 8.5e-47 191.8 350 40.3
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 3.2e-46 189.9 207 51.7
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 5.5e-46 189.1 331 43.8
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 1.6e-45 187.6 342 43.9
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 3.0e-44 183.3 202 54.0
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 5.1e-44 182.6 208 53.8
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 6.3e-42 175.6 113 79.6
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 2.6e-40 170.2 352 38.1
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 1.3e-39 167.9 114 76.3
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 7.2e-38 162.2 106 79.2
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 1.0e-31 141.7 146 56.2
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 2.5e-30 137.1 297 36.7
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 2.8e-26 123.6 103 63.1
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 2.8e-26 123.6 254 38.6
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 1.6e-24 117.9 201 43.8
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 7.7e-24 115.5 116 57.8
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 1.0e-23 115.2 68 82.4
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 3.8e-23 113.2 238 36.6
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 1.8e-20 104.4 168 37.5
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 2.6e-19 100.5 81 65.4
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.7e-18 97.8 183 36.6
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.7e-18 97.8 183 36.6
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 9.1e-17 92.0 87 58.6
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 3.3e-14 83.6 160 35.6
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 9.8e-11 72.0 276 30.4
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 5.4e-09 66.2 191 31.9
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 1.3e-07 61.6 50 66.0
unitig_749.g13565 Utricularia gibba HOM05D005155 ORTHO05D006266 8.6e-07 58.9 105 41.9
A02p30930 Brassica napus HOM05D005155 ORTHO05D006266 2.5e-06 57.4 66 48.5


User provided reference genes

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