Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 3.3e-78 295.0 158 100.0
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 8.2e-77 290.4 158 98.7
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 1.4e-73 279.6 158 94.9
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 2.6e-62 242.3 158 84.2
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.3e-61 240.0 158 83.5
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 1.0e-55 220.3 166 78.3
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 2.8e-53 212.2 155 76.1
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 3.6e-48 195.3 164 66.5
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 3.6e-48 195.3 164 66.5
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 4.7e-48 194.9 165 66.7
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 3.0e-47 192.2 165 67.9
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.2e-46 190.3 164 65.2
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 8.3e-45 184.1 165 65.5
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.5e-41 173.3 144 66.7
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 3.6e-40 168.7 159 64.2
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 6.1e-40 167.9 165 61.2
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 1.8e-39 166.4 158 61.4
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 3.4e-38 162.2 175 58.9
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 3.4e-38 162.2 161 59.6
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 1.1e-36 157.1 175 55.4
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 1.4e-36 156.8 175 57.1
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 2.4e-36 156.0 177 55.9
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 5.4e-36 154.8 158 59.5
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 9.2e-36 154.1 169 55.6
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 9.2e-36 154.1 169 55.6
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 9.2e-36 154.1 176 56.2
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 9.2e-36 154.1 178 52.2
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 2.0e-35 152.9 175 53.7
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 5.0e-34 148.3 148 56.1
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 6.6e-34 147.9 163 54.6
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 6.6e-34 147.9 140 62.9
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 1.5e-33 146.7 170 55.3
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 3.3e-33 145.6 169 57.4
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 5.6e-33 144.8 178 51.1
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 5.6e-33 144.8 180 55.0
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 5.6e-33 144.8 158 57.6
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 1.2e-32 143.7 183 52.5
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 1.2e-32 143.7 174 54.6
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 2.8e-32 142.5 171 49.7
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 3.6e-32 142.1 170 56.5
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 4.7e-32 141.7 162 58.6
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 6.1e-32 141.4 157 59.2
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 8.0e-32 141.0 178 51.7
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 8.0e-32 141.0 166 57.8
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 8.0e-32 141.0 160 58.8
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 1.4e-31 140.2 184 51.6
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 2.3e-31 139.4 120 68.3
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 3.0e-31 139.0 102 75.5
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 3.0e-31 139.0 153 55.6
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 4.0e-31 138.7 182 49.5
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 4.0e-31 138.7 179 49.2
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 5.2e-31 138.3 171 53.2
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 1.2e-30 137.1 182 49.5
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 1.5e-30 136.7 102 73.5
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 2.0e-30 136.3 183 53.6
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 4.4e-30 135.2 172 54.1
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 4.4e-30 135.2 163 57.1
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 5.7e-30 134.8 158 50.6
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 9.8e-30 134.0 182 48.4
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 1.3e-29 133.7 166 51.8
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 1.7e-29 133.3 163 53.4
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 2.2e-29 132.9 158 55.1
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 2.2e-29 132.9 158 55.1
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 3.7e-29 132.1 91 78.0
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 3.7e-29 132.1 164 53.7
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 8.3e-29 131.0 177 50.3
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 1.4e-28 130.2 164 53.0
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 1.4e-28 130.2 164 54.9
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 1.4e-28 130.2 155 52.3
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 2.4e-28 129.4 163 53.4
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 2.4e-28 129.4 87 78.2
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 4.1e-28 128.6 164 51.8
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 4.1e-28 128.6 164 51.8
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 4.1e-28 128.6 136 58.1
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 5.4e-28 128.3 121 60.3
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 5.4e-28 128.3 128 58.6
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 5.4e-28 128.3 139 56.8
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 9.2e-28 127.5 164 51.8
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 9.2e-28 127.5 160 52.5
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 1.2e-27 127.1 167 52.1
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 1.6e-27 126.7 162 51.2
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 2.0e-27 126.3 86 75.6
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 2.0e-27 126.3 86 75.6
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 2.0e-27 126.3 142 54.2
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 4.6e-27 125.2 162 50.6
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 5.9e-27 124.8 185 49.7
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 7.8e-27 124.4 178 48.9
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 1.0e-26 124.0 165 50.3
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 1.3e-26 123.6 163 50.3
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 1.7e-26 123.2 121 57.9
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 3.0e-26 122.5 165 46.1
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 3.9e-26 122.1 160 50.6
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 5.0e-26 121.7 165 48.5
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 6.6e-26 121.3 165 49.7
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 6.6e-26 121.3 165 49.7
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 6.6e-26 121.3 165 49.7
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 1.5e-25 120.2 173 51.4
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 1.9e-25 119.8 149 54.4
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 4.3e-25 118.6 166 47.6
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 4.3e-25 118.6 87 67.8
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 4.3e-25 118.6 87 67.8
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 7.3e-25 117.9 174 46.6
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 7.3e-25 117.9 170 47.6
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 8.9e-23 110.9 114 56.1
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 1.2e-22 110.5 88 65.9
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 1.3e-21 107.1 83 69.9
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 2.2e-21 106.3 165 44.8
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 3.7e-21 105.5 134 52.2
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 2.4e-20 102.8 80 66.2
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 9.2e-20 100.9 64 81.2
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 4.6e-19 98.6 83 61.4
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 3.3e-17 92.4 161 42.2
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 2.8e-16 89.4 81 58.0
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 8.1e-16 87.8 92 53.3
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 2.6e-14 82.8 84 51.2
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 3.5e-11 72.4 108 43.5
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 3.3e-09 65.9 62 62.9


User provided reference genes

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