Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g026230 Solanum pennellii HOM05D002534 ORTHO05D393763 3.6e-32 141.0 71 100.0
PGSC0003DMG400024860 Solanum tuberosum HOM05D002534 ORTHO05D003026 1.5e-09 65.9 35 94.3
Solyc04g063350.3 Solanum lycopersicum HOM05D002534 ORTHO05D003026 3.3e-09 64.7 35 94.3
Sopen04g026270 Solanum pennellii HOM05D002534 ORTHO05D003026 3.3e-09 64.7 35 94.3
Nitab4.5_0004515g0020 Nicotiana tabacum HOM05D002534 ORTHO05D003026 4.3e-09 64.3 35 94.3
Sopen04g026240 Solanum pennellii HOM05D002534 ORTHO05D393228 4.3e-09 64.3 48 77.1
Peaxi162Scf00066g01129 Petunia axillaris HOM05D002534 ORTHO05D003026 5.6e-09 63.9 35 88.6
CAN.G46.33 Capsicum annuum HOM05D002534 ORTHO05D003026 7.3e-09 63.5 39 84.6
Nitab4.5_0015800g0010 Nicotiana tabacum HOM05D002534 ORTHO05D003026 9.5e-09 63.2 35 91.4
Solyc06g059850.2 Solanum lycopersicum HOM05D002534 ORTHO05D003026 1.6e-08 62.4 35 88.6
Sopen06g019930 Solanum pennellii HOM05D002534 ORTHO05D003026 1.6e-08 62.4 35 88.6
Peaxi162Scf01184g00015 Petunia axillaris HOM05D002534 ORTHO05D003026 2.8e-08 61.6 35 91.4
PGSC0003DMG400004998 Solanum tuberosum HOM05D002534 ORTHO05D003026 3.6e-08 61.2 35 88.6
Nitab4.5_0000174g0040 Nicotiana tabacum HOM05D002534 ORTHO05D003026 4.7e-08 60.8 35 82.9
Sed0025264 Sechium edule HOM05D002534 ORTHO05D003026 4.7e-08 60.8 35 82.9
BcaB07g32130 Brassica carinata HOM05D002534 ORTHO05D003026 1.1e-07 59.7 35 74.3
BcaC07g39097 Brassica carinata HOM05D002534 ORTHO05D003026 1.1e-07 59.7 35 74.3
A08p28970 Brassica napus HOM05D002534 ORTHO05D003026 1.1e-07 59.7 35 74.3
C08p20810 Brassica napus HOM05D002534 ORTHO05D003026 1.1e-07 59.7 35 74.3
BolC8t49719H Brassica oleracea HOM05D002534 ORTHO05D003026 1.1e-07 59.7 35 74.3
Dinv24379 Davidia involucrata HOM05D002534 ORTHO05D003026 1.1e-07 59.7 71 43.7
Nitab4.5_0009134g0010 Nicotiana tabacum HOM05D002534 ORTHO05D003026 1.1e-07 59.7 35 82.9
Aa31LG7G5500 Aethionema arabicum HOM05D002534 ORTHO05D003026 1.4e-07 59.3 37 75.7
MELO3C008063.2 Cucumis melo HOM05D002534 ORTHO05D003026 1.4e-07 59.3 35 80.0
CsaV3_6G041570 Cucumis sativus L. HOM05D002534 ORTHO05D003026 1.4e-07 59.3 35 80.0
Nitab4.5_0016755g0010 Nicotiana tabacum HOM05D002534 ORTHO05D003026 1.4e-07 59.3 38 76.3
Sed0006874 Sechium edule HOM05D002534 ORTHO05D003026 1.4e-07 59.3 35 80.0
BraA06t24842Z Brassica rapa HOM05D002534 ORTHO05D003026 1.8e-07 58.9 35 74.3
ClCG01G015350 Citrullus lanatus HOM05D002534 ORTHO05D003026 1.8e-07 58.9 35 80.0
Atru.chr1.100 Acer truncatum HOM05D002534 ORTHO05D003026 2.4e-07 58.5 35 82.9
Atru.chr1.3582 Acer truncatum HOM05D002534 ORTHO05D003026 2.4e-07 58.5 35 82.9
Atru.chr2.1381 Acer truncatum HOM05D002534 ORTHO05D003026 2.4e-07 58.5 35 82.9
CAN.G319.12 Capsicum annuum HOM05D002534 ORTHO05D003026 3.1e-07 58.2 35 80.0
Nitab4.5_0001530g0070 Nicotiana tabacum HOM05D002534 ORTHO05D003026 3.1e-07 58.2 64 50.0
Prupe.4G272100 Prunus persica HOM05D002534 ORTHO05D003026 3.1e-07 58.2 35 80.0
Sp6g34020 Schrenkiella parvula HOM05D002534 ORTHO05D003026 3.1e-07 58.2 35 77.1
vmacro00877 Vaccinium macrocarpon HOM05D002534 ORTHO05D003026 3.1e-07 58.2 38 71.1
AT1G21400 Arabidopsis thaliana HOM05D002534 ORTHO05D003026 4.0e-07 57.8 36 69.4
CARHR204110 Cardamine hirsuta HOM05D002534 ORTHO05D003026 4.0e-07 57.8 35 74.3
Eucgr.I00194 Eucalyptus grandis HOM05D002534 ORTHO05D003026 4.0e-07 57.8 35 80.0
Hma1.2p1_0107F.1_g051210 Hydrangea macrophylla HOM05D002534 ORTHO05D003026 4.0e-07 57.8 35 77.1
Potri.005G064000 Populus trichocarpa HOM05D002534 ORTHO05D003026 4.0e-07 57.8 35 80.0
Thecc.08G137900 Theobroma cacao HOM05D002534 ORTHO05D003026 4.0e-07 57.8 35 80.0
BcaB03g12817 Brassica carinata HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 71.4
BcaC05g26050 Brassica carinata HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 71.4
A06p17460 Brassica napus HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 71.4
C05p20280 Brassica napus HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 71.4
BolC5t30724H Brassica oleracea HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 71.4
Carub.0001s2082 Capsella rubella HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 71.4
Thhalv10007543m.g Eutrema salsugineum HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 71.4
Gohir.A05G240500 Gossypium hirsutum HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 77.1
Gohir.D05G241600 Gossypium hirsutum HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 77.1
Gorai.009G251000 Gossypium raimondii HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 77.1
Rhsim11G0074900 Rhododendron simsii HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 77.1
Sp1g18950 Schrenkiella parvula HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 71.4
Sc03g0006040 Simmondsia chinensis HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 80.0
THA.LOC104818428 Tarenaya hassleriana HOM05D002534 ORTHO05D003026 5.2e-07 57.4 35 80.0
CARHR021790 Cardamine hirsuta HOM05D002534 ORTHO05D003026 6.8e-07 57.0 35 71.4
Cc07_g18640 Coffea canephora HOM05D002534 ORTHO05D003026 6.8e-07 57.0 35 77.1
Glyma.04G212100 Glycine max HOM05D002534 ORTHO05D003026 6.8e-07 57.0 35 80.0
Lalb_Chr11g0068511 Lupinus albus HOM05D002534 ORTHO05D003026 6.8e-07 57.0 35 77.1
MD01G1005600 Malus domestica HOM05D002534 ORTHO05D003026 6.8e-07 57.0 35 80.0
Atru.chr13.1645 Acer truncatum HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 80.0
AT5G09300 Arabidopsis thaliana HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 74.3
AT5G34780 Arabidopsis thaliana HOM05D002534 ORTHO05D003026 8.9e-07 56.6 39 64.1
CiPaw.15G024200 Carya illinoinensis HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 77.1
Ca_16953_v3 Cicer arietinum L. HOM05D000127 ORTHO05D000243 8.9e-07 56.6 35 74.3
Dinv25775 Davidia involucrata HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 80.0
Eucgr.F02765 Eucalyptus grandis HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 77.1
Lj1g0024399 Lotus japonicus HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 74.3
Medtr3g096390 Medicago truncatula HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 74.3
Potri.005G185400 Populus trichocarpa HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 77.1
RcHm_v2.0_Chr2g0121681 Rosa chinensis HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 77.1
RcHm_v2.0_Chr2g0121741 Rosa chinensis HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 77.1
Sabra02G0058500 Salix brachista HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 77.1
Sabra05G0141700 Salix brachista HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 77.1
SalBow7G2686 Salvia bowleyana HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 71.4
SGA_v2.0_scaffold20G09038 Striga asiatica HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 74.3
TPR.G22213 Trifolium pratense HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 74.3
TWI60G0417 Tripterygium wilfordii HOM05D002534 ORTHO05D003026 8.9e-07 56.6 35 77.1
Atru.chr4.877 Acer truncatum HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 80.0
AL1G34510 Arabidopsis lyrata HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 68.6
Carub.0006s0785 Capsella rubella HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 74.3
CiPaw.04G084600 Carya illinoinensis HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 74.3
COL.COLO4_38145 Corchorus olitorius HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 74.3
FAN28G0843 Fragaria x ananassa HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 74.3
Gohir.A05G383600 Gossypium hirsutum HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 74.3
Lj7A357T25 Lonicera japonica HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 71.4
MD15G1133900 Malus domestica HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 74.3
Manes.12G156700 Manihot esculenta HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 80.0
Psat5g061560 Pisum sativum HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 74.3
TWI79G1148 Tripterygium wilfordii HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 77.1
TAR628G0895 Trochodendron aralioides HOM05D002534 ORTHO05D003026 1.2e-06 56.2 35 80.0
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.5e-06 55.8 35 74.3
EL10Ac1g01406 Beta vulgaris HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 74.3
Cfa002906 Carpinus fangiana HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 77.1
Cfa018398 Carpinus fangiana HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 77.1
Haze_25182 Corylus avellana HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 77.1
Haze_25259 Corylus avellana HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 77.1
FAN19G1498 Fragaria x ananassa HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 74.3
FAN26G1103 Fragaria x ananassa HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 74.3
Nitab4.5_0001530g0080 Nicotiana tabacum HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 80.0
Oeu004237.1 Olea europaea HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 77.1
PSO170G4855 Papaver somniferum HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 74.3
PSO528G0082 Papaver somniferum HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 74.3
VMungo1309G0701 Vigna mungo HOM05D002534 ORTHO05D003026 1.5e-06 55.8 39 71.8
GSVIVG01026470001 Vitis vinifera HOM05D002534 ORTHO05D003026 1.5e-06 55.8 35 77.1
arahy.Tifrunner.gnm1.ann1.B1W7C6 Arachis hypogaea HOM05D002534 ORTHO05D003026 2.0e-06 55.5 35 71.4
arahy.Tifrunner.gnm1.ann1.EB1RPN Arachis hypogaea HOM05D002534 ORTHO05D003026 2.0e-06 55.5 35 71.4
MSTRG.23463 Avicennia marina HOM05D002534 ORTHO05D003026 2.0e-06 55.5 35 74.3
Ciclev10001030m.g Citrus clementina HOM05D002534 ORTHO05D003026 2.0e-06 55.5 35 71.4
COL.COLO4_35763 Corchorus olitorius HOM05D002534 ORTHO05D003026 2.0e-06 55.5 35 74.3
Haze_17668 Corylus avellana HOM05D002534 ORTHO05D003026 2.0e-06 55.5 35 74.3
Duzib264G1132 Durio zibethinus HOM05D002534 ORTHO05D003026 2.0e-06 55.5 35 74.3
Phvul.009G156400 Phaseolus vulgaris HOM05D002534 ORTHO05D003026 2.0e-06 55.5 39 71.8
QL10p043417 Quercus lobata HOM05D002534 ORTHO05D003026 2.0e-06 55.5 35 77.1
Sabra05G0053300 Salix brachista HOM05D002534 ORTHO05D003026 2.0e-06 55.5 35 77.1
Solyc12g055880.3 Solanum lycopersicum HOM05D002534 ORTHO05D003026 2.0e-06 55.5 36 75.0
HPP92_027073 Vanilla planifolia HOM05D002534 ORTHO05D003026 2.0e-06 55.5 42 66.7
Actinidia29500 Actinidia chinensis HOM05D002534 ORTHO05D003026 2.6e-06 55.1 35 74.3
Os12g0183100 Oryza sativa ssp. japonica HOM05D002534 ORTHO05D003026 2.6e-06 55.1 35 77.1
Rhsim08G0002200 Rhododendron simsii HOM05D002534 ORTHO05D003026 2.6e-06 55.1 35 74.3
PGSC0003DMG400013029 Solanum tuberosum HOM05D002534 ORTHO05D003026 2.6e-06 55.1 35 71.4
THA.LOC104812058 Tarenaya hassleriana HOM05D002534 ORTHO05D003026 2.6e-06 55.1 35 68.6
unitig_749.g13924 Utricularia gibba HOM05D002534 ORTHO05D003026 2.6e-06 55.1 35 71.4
GSVIVG01009978001 Vitis vinifera HOM05D002534 ORTHO05D003026 2.6e-06 55.1 35 74.3
Ah.02g112990 Amaranthus hybridus HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 71.4
AL6G19690 Arabidopsis lyrata HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 74.3
BraA03t09752Z Brassica rapa HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 71.4
Cpa.g.sc26.70 Carica papaya HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 74.3
Cfa002864 Carpinus fangiana HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 77.1
ClCG08G003330 Citrullus lanatus HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 71.4
Thhalv10013452m.g Eutrema salsugineum HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 74.3
Gohir.A02G069000 Gossypium hirsutum HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 77.1
Gohir.D02G075700 Gossypium hirsutum HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 77.1
Lsat_1_v5_gn_1_9280 Lactuca sativa HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 68.6
RcHm_v2.0_Chr2g0121751 Rosa chinensis HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 74.3
Solyc06g059840.4 Solanum lycopersicum HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 71.4
Sopen06g019920 Solanum pennellii HOM05D002534 ORTHO05D003026 3.4e-06 54.7 35 71.4
A03p04090 Brassica napus HOM05D002534 ORTHO05D003026 4.4e-06 54.3 35 71.4
C03p04550 Brassica napus HOM05D002534 ORTHO05D003026 4.4e-06 54.3 35 71.4
BolC3t12986H Brassica oleracea HOM05D002534 ORTHO05D003026 4.4e-06 54.3 35 71.4
AUR62007673 Chenopodium quinoa HOM05D002534 ORTHO05D003026 4.4e-06 54.3 35 71.4
Ciclev10000963m.g Citrus clementina HOM05D002534 ORTHO05D003026 4.4e-06 54.3 35 77.1
Migut.C01090 Erythranthe guttata HOM05D002534 ORTHO05D003026 4.4e-06 54.3 35 71.4
Sed0000431 Sechium edule HOM05D002534 ORTHO05D003026 4.4e-06 54.3 35 74.3
ATR0584G022 Amborella trichopoda HOM05D002534 ORTHO05D003026 5.8e-06 53.9 35 71.4
CiPaw.03G120500 Carya illinoinensis HOM05D002534 ORTHO05D003026 5.8e-06 53.9 35 77.1
AUR62013461 Chenopodium quinoa HOM05D002534 ORTHO05D003026 5.8e-06 53.9 35 71.4
Duzib093G1801 Durio zibethinus HOM05D002534 ORTHO05D003026 5.8e-06 53.9 35 74.3
Nn1g06287 Nelumbo nucifera HOM05D002534 ORTHO05D003026 5.8e-06 53.9 35 71.4
QL09p029611 Quercus lobata HOM05D002534 ORTHO05D003026 5.8e-06 53.9 35 77.1
Thecc.01G134100 Theobroma cacao HOM05D002534 ORTHO05D003026 5.8e-06 53.9 35 71.4
Cc10_g13270 Coffea canephora HOM05D002534 ORTHO05D003026 7.6e-06 53.5 35 68.6
DCAR_014113 Daucus carota HOM05D002534 ORTHO05D003026 7.6e-06 53.5 35 68.6
Gohir.D04G031700 Gossypium hirsutum HOM05D002534 ORTHO05D003026 7.6e-06 53.5 35 71.4
Gorai.012G036000 Gossypium raimondii HOM05D002534 ORTHO05D003026 7.6e-06 53.5 35 71.4
PGR119G1133 Punica granatum HOM05D002534 ORTHO05D003026 7.6e-06 53.5 35 68.6
Hund26763 Selenicereus undatus HOM05D002534 ORTHO05D003026 7.6e-06 53.5 35 71.4
Zm00001eb409040 Zea mays HOM05D002534 ORTHO05D003026 7.6e-06 53.5 35 74.3
Ca_16634_v3 Cicer arietinum L. HOM05D002534 ORTHO05D003026 9.9e-06 53.1 33 72.7
Lj2A607T36 Lonicera japonica HOM05D002534 ORTHO05D003026 9.9e-06 53.1 35 71.4
Medtr3g088845 Medicago truncatula HOM05D002534 ORTHO05D003026 9.9e-06 53.1 33 72.7
Medtr8g075470 Medicago truncatula HOM05D002534 ORTHO05D003026 9.9e-06 53.1 33 72.7
Psat5g083520 Pisum sativum HOM05D002534 ORTHO05D003026 9.9e-06 53.1 33 72.7
QL06p051903 Quercus lobata HOM05D002534 ORTHO05D003026 9.9e-06 53.1 35 71.4
TPR.G6309 Trifolium pratense HOM05D002534 ORTHO05D003026 9.9e-06 53.1 33 72.7
VMungo1309G2524 Vigna mungo HOM05D002534 ORTHO05D003026 9.9e-06 53.1 36 66.7


User provided reference genes

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