Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 9.2e-90 333.6 172 100.0
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.1e-79 300.1 170 92.9
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.0e-65 251.1 165 78.8
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.5e-63 246.5 165 77.0
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.4e-61 239.2 164 76.2
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 8.1e-54 214.2 165 64.8
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 9.0e-53 210.7 170 63.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 5.8e-52 208.0 164 64.6
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.7e-51 206.5 164 64.6
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.7e-51 206.5 164 64.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.3e-48 196.8 170 58.8
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.3e-48 196.1 165 60.6
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 4.3e-47 191.8 170 57.1
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.7e-46 188.7 165 57.0
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 8.1e-46 187.6 165 55.2
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.1e-45 187.2 164 59.1
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.8e-45 186.4 165 56.4
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.4e-45 186.0 170 56.5
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 3.1e-45 185.7 165 54.5
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.1e-45 185.7 165 54.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.1e-45 185.7 164 56.7
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.0e-45 185.3 165 55.8
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 5.3e-45 184.9 161 57.8
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 6.9e-45 184.5 165 55.2
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 9.0e-45 184.1 165 58.2
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.2e-44 183.7 164 57.9
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 2.0e-44 183.0 165 55.2
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 2.6e-44 182.6 165 55.8
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 2.6e-44 182.6 165 55.2
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.6e-44 182.6 166 55.4
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.4e-44 182.2 165 55.2
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.4e-44 182.2 164 56.1
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 4.5e-44 181.8 165 54.5
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 4.5e-44 181.8 161 57.8
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 4.5e-44 181.8 170 54.7
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 4.5e-44 181.8 170 55.3
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 4.5e-44 181.8 164 57.3
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 9.9e-44 180.6 165 57.0
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.7e-43 179.9 165 56.4
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 4.9e-43 178.3 166 54.8
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 6.4e-43 177.9 163 54.6
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.4e-43 177.9 165 54.5
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 8.4e-43 177.6 164 53.0
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 8.4e-43 177.6 165 53.3
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.1e-42 177.2 165 54.5
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.1e-42 177.2 165 55.2
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.4e-42 176.8 161 56.5
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.2e-42 175.6 165 53.9
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 3.2e-42 175.6 165 55.8
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 4.2e-42 175.3 164 52.4
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.2e-42 175.3 163 52.1
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 5.5e-42 174.9 160 56.9
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 7.1e-42 174.5 149 59.1
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 9.3e-42 174.1 164 53.0
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.2e-41 173.7 164 55.5
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.2e-41 173.7 165 53.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.6e-41 173.3 164 54.3
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.6e-41 173.3 146 59.6
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.6e-41 173.3 164 53.0
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.7e-41 172.6 165 50.9
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.5e-41 172.2 160 53.8
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 3.5e-41 172.2 165 50.9
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.6e-41 171.8 164 52.4
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.6e-41 171.8 164 54.9
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 4.6e-41 171.8 164 51.2
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 6.0e-41 171.4 165 55.8
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 6.0e-41 171.4 163 54.6
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 7.9e-41 171.0 164 51.2
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.9e-41 171.0 163 49.7
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 7.9e-41 171.0 165 55.2
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.9e-41 171.0 165 49.7
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.9e-41 171.0 165 49.7
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.3e-40 170.2 164 53.7
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.8e-40 169.9 163 52.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.8e-40 169.9 164 51.2
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.8e-40 169.9 164 54.9
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.0e-40 169.1 165 50.9
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 3.0e-40 169.1 160 56.2
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.0e-40 169.1 163 53.4
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.9e-40 168.7 165 51.5
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 6.7e-40 167.9 164 51.8
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 6.7e-40 167.9 165 53.9
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-39 167.2 163 52.8
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.1e-39 167.2 165 49.1
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.1e-39 167.2 164 51.8
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.5e-39 166.8 166 50.6
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 2.5e-39 166.0 165 53.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 2.5e-39 166.0 161 54.0
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-39 166.0 163 52.1
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.5e-39 166.0 164 51.8
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 3.3e-39 165.6 164 51.8
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 3.3e-39 165.6 161 54.0
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 5.6e-39 164.9 165 50.3
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 5.6e-39 164.9 165 50.3
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 5.6e-39 164.9 171 49.7
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 5.6e-39 164.9 163 52.1
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.3e-38 163.7 163 50.9
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.3e-38 163.7 161 50.9
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.1e-38 162.9 163 50.3
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 2.1e-38 162.9 144 56.2
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 2.1e-38 162.9 164 49.4
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.8e-38 162.5 165 49.1
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 4.8e-38 161.8 163 50.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 4.8e-38 161.8 161 50.9
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.8e-38 161.8 165 49.7
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 6.2e-38 161.4 170 48.8
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 6.2e-38 161.4 164 51.2
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 8.2e-38 161.0 163 50.3
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 8.2e-38 161.0 164 51.8
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.1e-37 160.6 170 49.4
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.4e-37 160.2 165 49.1
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.8e-37 159.8 161 50.9
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.4e-37 159.5 165 47.9
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.4e-37 159.5 163 50.9
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 9.0e-37 157.5 149 53.7
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 9.0e-37 157.5 161 50.9
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.5e-36 156.8 165 50.3
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.8e-36 154.8 160 48.8
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 7.6e-36 154.5 163 48.5
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.0e-35 154.1 166 49.4
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.3e-35 153.7 170 47.1
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 4.9e-35 151.8 163 46.0
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 4.9e-35 151.8 163 46.0
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 4.9e-35 151.8 163 47.2
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.1e-34 150.6 163 44.8
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.1e-34 150.6 163 44.8
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.1e-34 150.6 165 46.7
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.9e-34 149.8 163 45.4
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.9e-34 149.8 163 47.2
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 3.2e-34 149.1 165 46.1
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.2e-34 149.1 164 46.3
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.2e-34 149.1 161 49.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.1e-33 146.4 168 48.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 7.9e-33 144.4 167 46.7
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.0e-32 144.1 165 45.5
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 3.9e-32 142.1 165 44.8
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.1e-31 140.6 163 46.6
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 4.3e-31 138.7 114 57.9
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.6e-30 136.7 86 83.7
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.4e-29 133.7 163 44.2
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 4.1e-29 132.1 161 43.5
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.9e-29 131.3 161 43.5
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 9.0e-29 131.0 163 41.7
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-28 130.6 124 53.2
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.4e-28 129.0 134 49.3
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 5.9e-28 128.3 162 42.6
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.7e-27 126.7 161 41.6
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.9e-27 125.9 158 43.7
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.0e-27 125.2 146 45.2
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.5e-26 122.9 140 54.3
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 9.3e-26 120.9 141 41.8
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.2e-25 120.6 104 54.8
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.2e-25 120.6 161 43.5
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.6e-25 120.2 162 42.0
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 2.7e-25 119.4 164 40.9
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 2.7e-25 119.4 162 42.0
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.0e-24 117.5 153 42.5
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.8e-24 116.7 166 42.2
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.3e-24 116.3 124 46.8
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 3.9e-24 115.5 104 51.0
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 8.7e-24 114.4 164 39.6
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.9e-23 113.2 166 41.6
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.3e-23 112.1 163 41.7
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 6.5e-19 98.2 165 38.8
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.1e-15 87.4 81 50.6
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.1e-15 87.4 55 81.8
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 7.4e-15 84.7 74 60.8
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 9.7e-15 84.3 106 48.1
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.1e-13 80.9 88 47.7
Solyc04g040020.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.0e-12 76.6 52 82.7
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.5e-11 71.6 66 53.0
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 5.5e-10 68.6 100 36.0
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 7.2e-10 68.2 159 28.9
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 6.1e-09 65.1 186 26.3
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.3e-08 63.2 154 29.9
Nitab4.5_0002521g0060 Nicotiana tabacum HOM05D015872 ORTHO05D284606 5.7e-07 58.5 37 75.7


User provided reference genes

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