Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 2.7e-100 369.8 299 100.0
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 7.4e-98 361.7 299 99.0
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 5.1e-91 339.0 299 95.3
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 9.1e-88 328.2 299 92.3
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 2.6e-87 326.6 299 92.6
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 2.6e-87 326.6 315 72.4
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 1.4e-75 287.7 300 84.7
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 4.0e-75 286.2 300 85.7
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 8.8e-75 285.0 300 84.7
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 2.6e-74 283.5 300 86.3
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 9.7e-74 281.6 300 84.3
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 2.2e-73 280.4 223 80.3
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 3.7e-73 279.6 300 83.0
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 1.8e-72 277.3 226 62.8
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 7.0e-72 275.4 225 81.8
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.2e-71 274.6 225 78.7
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 4.5e-71 272.7 222 82.0
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 2.9e-70 270.0 300 67.7
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 1.5e-69 267.7 225 77.3
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 1.9e-69 267.3 169 78.7
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 3.2e-69 266.5 222 78.8
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 4.2e-69 266.2 223 78.9
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 7.2e-69 265.4 222 79.7
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 7.2e-69 265.4 169 76.9
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 9.4e-69 265.0 301 82.7
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 2.7e-68 263.5 224 75.9
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 8.0e-68 261.9 225 78.2
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 1.0e-67 261.5 222 78.4
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 1.4e-67 261.2 222 76.1
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 2.3e-67 260.4 300 82.3
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 2.3e-67 260.4 222 77.9
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 4.0e-67 259.6 224 77.7
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 5.2e-67 259.2 224 76.8
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 5.2e-67 259.2 223 77.6
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 6.8e-67 258.8 222 76.1
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 8.8e-67 258.5 221 77.4
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 8.8e-67 258.5 222 77.9
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 2.0e-66 257.3 224 75.9
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 2.0e-66 257.3 222 76.6
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 2.0e-66 257.3 223 77.6
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 2.0e-66 257.3 225 77.8
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 2.0e-66 257.3 300 80.3
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.0e-66 257.3 224 75.9
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 2.6e-66 256.9 222 77.0
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 4.4e-66 256.1 222 77.9
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 4.4e-66 256.1 224 76.3
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 9.8e-66 255.0 222 76.1
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 9.8e-66 255.0 222 76.1
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 9.8e-66 255.0 222 77.5
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 2.2e-65 253.8 222 75.7
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 2.2e-65 253.8 222 77.5
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 2.2e-65 253.8 222 77.5
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 2.8e-65 253.4 222 75.7
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 2.8e-65 253.4 225 56.4
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 3.7e-65 253.1 221 76.5
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 4.8e-65 252.7 300 78.3
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 8.3e-65 251.9 222 75.2
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.1e-64 251.5 224 76.8
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.1e-64 251.5 222 77.0
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 1.4e-64 251.1 222 75.2
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.4e-64 251.1 222 77.5
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 1.4e-64 251.1 223 77.6
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 2.4e-64 250.4 225 76.9
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 9.1e-64 248.4 222 76.6
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 9.1e-64 248.4 222 55.9
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 9.1e-64 248.4 300 81.0
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 1.6e-63 247.7 225 74.2
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 1.6e-63 247.7 225 72.4
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 1.6e-63 247.7 224 72.8
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 2.0e-63 247.3 226 75.7
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 2.7e-63 246.9 300 79.3
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 3.5e-63 246.5 172 69.8
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 3.5e-63 246.5 169 71.6
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 4.5e-63 246.1 225 74.7
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 7.7e-63 245.4 222 64.4
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 1.3e-62 244.6 227 74.4
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 2.3e-62 243.8 223 74.0
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 3.8e-62 243.0 222 68.5
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 6.6e-62 242.3 226 70.4
Sc08g0006030 Simmondsia chinensis HOM05D003361 ORTHO05D003760 6.6e-62 242.3 225 72.9
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 8.6e-62 241.9 222 73.0
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 1.1e-61 241.5 300 80.3
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 1.1e-61 241.5 225 73.8
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.1e-61 241.5 221 73.3
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 2.5e-61 240.4 226 70.4
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 7.2e-61 238.8 300 77.7
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 7.2e-61 238.8 225 74.7
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 9.5e-61 238.4 222 74.3
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.2e-60 238.0 224 72.3
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 2.1e-60 237.3 225 72.0
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 3.6e-60 236.5 226 73.0
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 6.1e-60 235.7 224 72.3
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 8.0e-60 235.3 225 72.9
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 1.0e-59 235.0 225 73.3
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 1.4e-59 234.6 169 70.4
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 3.0e-59 233.4 225 73.3
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 4.0e-59 233.0 168 66.7
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 5.2e-59 232.6 225 72.9
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 5.2e-59 232.6 224 71.9
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 5.2e-59 232.6 224 71.9
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 6.8e-59 232.3 225 73.3
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 1.2e-58 231.5 224 71.4
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 1.5e-58 231.1 226 71.2
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 3.4e-58 229.9 225 73.3
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 3.4e-58 229.9 224 72.3
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 4.4e-58 229.6 222 70.3
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 5.7e-58 229.2 225 72.0
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 7.5e-58 228.8 225 73.3
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 9.8e-58 228.4 224 62.5
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 1.3e-57 228.0 221 72.9
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 1.3e-57 228.0 226 70.4
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 2.2e-57 227.3 169 66.9
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 3.7e-57 226.5 225 72.9
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 1.1e-56 224.9 224 71.0
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 1.8e-56 224.2 224 69.6
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 5.4e-56 222.6 169 66.3
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 7.0e-56 222.2 225 70.2
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 7.0e-56 222.2 219 73.1
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 1.2e-55 221.5 170 65.3
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 1.2e-55 221.5 223 70.0
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.6e-55 221.1 225 67.1
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 2.0e-55 220.7 225 68.0
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 2.0e-55 220.7 225 60.0
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 2.7e-55 220.3 224 70.1
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 3.5e-55 219.9 224 61.2
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 4.5e-55 219.5 226 68.6
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 1.0e-54 218.4 224 51.8
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 1.7e-54 217.6 226 69.0
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 1.7e-54 217.6 170 66.5
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 5.0e-54 216.1 168 64.9
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 4.3e-53 213.0 223 68.2
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 9.5e-53 211.8 231 66.2
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 1.4e-51 208.0 221 67.4
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 1.7e-49 201.1 231 63.6
SEGI_28212 Sequoiadendron giganteum HOM05D003361 ORTHO05D003760 2.2e-49 200.7 225 61.3
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 8.3e-49 198.7 168 62.5
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 1.4e-48 198.0 225 64.4
Psat1g109200 Pisum sativum HOM05D003361 ORTHO05D003760 1.4e-48 198.0 224 50.4
HanXRQChr09g0274781 Helianthus annuus HOM05D003361 ORTHO05D003760 1.2e-47 194.9 168 57.7
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 5.0e-46 189.5 169 57.4
PSO017G3211 Papaver somniferum HOM05D003361 ORTHO05D003760 6.6e-46 189.1 231 64.1
PSO170G6803 Papaver somniferum HOM05D003361 ORTHO05D003760 8.6e-46 188.7 176 57.4
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 3.3e-45 186.8 169 58.0
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 1.6e-44 184.5 169 58.0
Nitab4.5_0002286g0090 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.6e-44 184.5 169 56.8
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 2.1e-44 184.1 225 44.0
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 3.6e-44 183.3 309 57.6
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 8.0e-44 182.2 169 57.4
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 8.0e-44 182.2 169 57.4
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.4e-43 181.4 169 55.6
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 2.3e-43 180.6 231 63.6
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 3.1e-43 180.3 117 70.1
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 3.1e-43 180.3 172 55.2
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 4.0e-43 179.9 168 56.5
Peaxi162Scf01694g00019 Petunia axillaris HOM05D003361 ORTHO05D003760 4.4e-42 176.4 170 55.3
PGSC0003DMG400030688 Solanum tuberosum HOM05D003361 ORTHO05D003760 5.8e-42 176.0 169 56.8
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 4.1e-40 169.9 189 65.1
Pp3c4_3150 Physcomitrium patens HOM05D003361 ORTHO05D003760 7.8e-39 165.6 228 57.9
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 1.1e-37 161.8 300 56.3
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 1.5e-37 161.4 150 82.7
Mapoly0032s0095 Marchantia polymorpha HOM05D003361 ORTHO05D003760 1.5e-37 161.4 227 43.6
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.6e-36 157.9 174 70.1
Nitab4.5_0002329g0140 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.6e-36 156.8 168 50.6
SMO200G0229 Selaginella moellendorffii HOM05D003361 ORTHO05D003760 4.7e-36 156.4 224 38.4
AagrBONN_evm.TU.Sc2ySwM_362.1382 Anthoceros agrestis HOM05D003361 ORTHO05D003760 3.1e-35 153.7 228 54.8
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 4.0e-35 153.3 189 66.7
Pp3c8_1510 Physcomitrium patens HOM05D003361 ORTHO05D003760 4.4e-34 149.8 229 53.7
Nitab4.5_0008536g0030 Nicotiana tabacum HOM05D003361 ORTHO05D003760 8.3e-33 145.6 169 50.9
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 7.8e-31 139.0 150 68.7
arahy.Tifrunner.gnm1.ann1.TB3UR8 Arachis hypogaea HOM05D003361 ORTHO05D003760 8.6e-30 135.6 209 42.1
arahy.Tifrunner.gnm1.ann1.YII6YD Arachis hypogaea HOM05D003361 ORTHO05D003760 8.6e-30 135.6 209 42.1
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 8.6e-30 135.6 149 67.1
SGA_v2.0_scaffold11G05885 Striga asiatica HOM05D003361 ORTHO05D003760 9.6e-21 105.5 147 48.3
Oeu027837.1 Olea europaea HOM05D003361 ORTHO05D003760 9.0e-19 99.0 102 91.2
Psat0s520g0120 Pisum sativum HOM05D003361 ORTHO05D003760 1.1e-16 92.0 114 53.5
Glyma.15G006200 Glycine max HOM05D003361 ORTHO05D003760 1.4e-16 91.7 97 53.6
Actinidia08955 Actinidia chinensis HOM05D003361 ORTHO05D003760 3.6e-12 77.0 99 84.8
SGA_v2.0_scaffold38G14981 Striga asiatica HOM05D003361 ORTHO05D003760 2.0e-10 71.2 103 47.6
RcHm_v2.0_Chr1g0325881 Rosa chinensis HOM05D003361 ORTHO05D003760 4.5e-10 70.1 66 56.1
MCO10G095 Micromonas commoda HOM05D003361 ORTHO05D003760 8.4e-09 65.9 86 39.5
CAN.G509.10 Capsicum annuum HOM05D003361 ORTHO05D003760 4.2e-08 63.5 50 62.0
RcHm_v2.0_Chr6g0252571 Rosa chinensis HOM05D003361 ORTHO05D003760 4.2e-08 63.5 61 57.4
MD17G1216900 Malus domestica HOM05D003361 ORTHO05D003760 1.3e-06 58.5 58 56.9


User provided reference genes

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