Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 1.5e-74 282.7 142 100.0
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 5.8e-74 280.8 142 98.6
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 2.7e-71 271.9 142 95.1
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 3.8e-65 251.5 142 90.8
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 4.1e-51 204.9 133 78.9
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 1.8e-46 189.5 130 79.2
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 2.6e-45 185.7 122 78.7
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.6e-34 149.8 138 58.7
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 2.0e-34 149.4 142 60.6
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 3.5e-34 148.7 163 54.0
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 4.5e-34 148.3 148 56.8
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 7.7e-34 147.5 138 58.0
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 2.2e-33 146.0 138 58.0
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 3.8e-33 145.2 140 55.7
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 3.8e-33 145.2 145 57.2
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 6.5e-33 144.4 140 57.9
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 6.5e-33 144.4 129 60.5
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 8.5e-33 144.1 142 59.9
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 8.5e-33 144.1 135 59.3
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 1.9e-32 142.9 138 58.0
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 2.5e-32 142.5 138 56.5
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 2.5e-32 142.5 138 56.5
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 2.5e-32 142.5 140 58.6
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 5.5e-32 141.4 146 54.8
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 7.2e-32 141.0 134 57.5
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 7.2e-32 141.0 140 58.6
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 9.4e-32 140.6 142 54.2
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 9.4e-32 140.6 145 55.2
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 1.2e-31 140.2 141 58.9
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 2.1e-31 139.4 138 57.2
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 2.1e-31 139.4 138 56.5
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 2.7e-31 139.0 138 56.5
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 6.1e-31 137.9 138 56.5
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 8.0e-31 137.5 146 52.7
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 1.8e-30 136.3 155 54.2
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 1.8e-30 136.3 155 52.9
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 2.3e-30 136.0 137 51.8
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 3.0e-30 135.6 149 55.0
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 4.0e-30 135.2 149 55.0
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 5.2e-30 134.8 129 59.7
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 1.2e-29 133.7 138 57.2
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.5e-29 133.3 138 55.1
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 1.5e-29 133.3 132 57.6
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 1.5e-29 133.3 135 55.6
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 2.6e-29 132.5 139 54.7
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 3.3e-29 132.1 136 58.8
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 3.3e-29 132.1 137 54.7
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 4.4e-29 131.7 134 53.0
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 7.5e-29 131.0 145 52.4
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 9.7e-29 130.6 140 55.0
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 1.3e-28 130.2 138 57.2
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 2.2e-28 129.4 139 51.8
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 2.8e-28 129.0 126 56.3
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 2.8e-28 129.0 151 49.0
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 2.8e-28 129.0 140 54.3
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 4.8e-28 128.3 150 54.0
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 4.8e-28 128.3 151 49.0
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 4.8e-28 128.3 145 51.7
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 1.1e-27 127.1 136 55.9
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 1.8e-27 126.3 133 55.6
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 3.1e-27 125.6 138 52.2
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 3.1e-27 125.6 121 57.0
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 5.3e-27 124.8 143 51.0
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 1.2e-26 123.6 138 50.7
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 2.0e-26 122.9 136 55.1
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 3.5e-26 122.1 144 48.6
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 3.5e-26 122.1 105 61.0
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 4.5e-26 121.7 118 53.4
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 5.9e-26 121.3 125 56.0
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 5.9e-26 121.3 148 49.3
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 1.0e-25 120.6 146 52.7
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 1.7e-25 119.8 105 61.9
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 8.5e-25 117.5 132 51.5
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 1.5e-24 116.7 142 50.7
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 2.5e-24 115.9 108 56.5
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 4.2e-24 115.2 129 52.7
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 7.2e-24 114.4 117 51.3
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 9.4e-24 114.0 140 50.0
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 3.6e-23 112.1 136 50.0
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 3.6e-23 112.1 123 53.7
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 2.3e-22 109.4 126 54.8
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 3.0e-22 109.0 126 57.9
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 4.4e-21 105.1 132 49.2
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 6.3e-20 101.3 124 46.8
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 1.1e-19 100.5 164 42.7
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 3.1e-19 99.0 146 45.2
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 3.1e-19 99.0 146 45.2
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.6e-18 96.7 147 44.2
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 3.5e-18 95.5 139 44.6
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 3.5e-18 95.5 132 47.7
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 5.9e-18 94.7 121 48.8
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 7.7e-18 94.4 121 47.9
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 1.7e-17 93.2 115 47.8
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 2.3e-17 92.8 140 45.0
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 3.8e-17 92.0 141 44.7
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 3.8e-17 92.0 121 47.1
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 6.5e-17 91.3 133 41.4
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 6.5e-17 91.3 78 57.7
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 8.6e-17 90.9 143 44.8
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 1.1e-16 90.5 120 44.2
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 1.9e-16 89.7 120 41.7
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 3.3e-16 89.0 77 59.7
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 4.2e-16 88.6 145 42.8
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 2.1e-15 86.3 147 42.9
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 6.8e-14 81.3 139 43.2
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 7.5e-13 77.8 145 40.7
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 3.7e-12 75.5 75 56.0
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 3.8e-09 65.5 166 31.9
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 9.5e-08 60.8 91 42.9
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 5.2e-06 55.1 97 41.2


User provided reference genes

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